Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1332

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1331 and GFF1332 are separated by 41 nucleotidesGFF1332 and GFF1333 overlap by 4 nucleotides GFF1331 - 3-dehydroquinate synthase (EC 4.2.3.4), at 183,783 to 184,904 GFF1331 GFF1332 - Shikimate kinase I (EC 2.7.1.71), at 184,946 to 185,509 GFF1332 GFF1333 - Type IV pilus biogenesis protein PilQ, at 185,506 to 187,590 GFF1333 Position (kb) 184 185 186Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 184.102 kb on + strand, within GFF1331at 184.315 kb on + strand, within GFF1331at 184.316 kb on - strand, within GFF1331at 184.405 kb on + strand, within GFF1331at 184.405 kb on + strand, within GFF1331at 184.406 kb on - strand, within GFF1331at 184.406 kb on - strand, within GFF1331at 184.406 kb on - strand, within GFF1331at 184.406 kb on - strand, within GFF1331at 184.525 kb on + strand, within GFF1331at 184.525 kb on + strand, within GFF1331at 184.525 kb on + strand, within GFF1331at 184.525 kb on + strand, within GFF1331at 184.525 kb on + strand, within GFF1331at 184.525 kb on + strand, within GFF1331at 184.526 kb on - strand, within GFF1331at 184.526 kb on - strand, within GFF1331at 184.526 kb on - strand, within GFF1331at 184.654 kb on + strand, within GFF1331at 184.654 kb on + strand, within GFF1331at 184.655 kb on - strand, within GFF1331at 184.655 kb on - strand, within GFF1331at 184.655 kb on - strand, within GFF1331at 184.696 kb on + strand, within GFF1331at 184.697 kb on - strand, within GFF1331at 184.697 kb on - strand, within GFF1331at 184.697 kb on - strand, within GFF1331at 184.732 kb on + strand, within GFF1331at 184.795 kb on + strandat 184.795 kb on + strandat 184.795 kb on + strandat 184.796 kb on - strandat 184.796 kb on - strandat 184.840 kb on + strandat 184.840 kb on + strandat 184.841 kb on - strandat 184.841 kb on - strandat 184.841 kb on - strandat 184.841 kb on - strandat 184.841 kb on - strandat 184.841 kb on - strandat 184.841 kb on - strandat 184.841 kb on - strandat 184.918 kb on - strandat 184.947 kb on + strandat 184.948 kb on - strandat 185.086 kb on - strand, within GFF1332at 185.181 kb on + strand, within GFF1332at 185.182 kb on - strand, within GFF1332at 185.182 kb on - strand, within GFF1332at 185.208 kb on + strand, within GFF1332at 185.209 kb on - strand, within GFF1332at 185.209 kb on - strand, within GFF1332at 185.209 kb on - strand, within GFF1332at 185.668 kb on - strandat 185.668 kb on - strandat 185.668 kb on - strandat 185.981 kb on + strand, within GFF1333at 186.134 kb on + strand, within GFF1333at 186.134 kb on + strand, within GFF1333at 186.135 kb on - strand, within GFF1333at 186.135 kb on - strand, within GFF1333at 186.135 kb on - strand, within GFF1333at 186.473 kb on + strand, within GFF1333at 186.473 kb on + strand, within GFF1333at 186.474 kb on - strand, within GFF1333at 186.474 kb on - strand, within GFF1333at 186.474 kb on - strand, within GFF1333at 186.474 kb on - strand, within GFF1333at 186.474 kb on - strand, within GFF1333

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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184,102 + GFF1331 0.28 -1.4
184,315 + GFF1331 0.47 -2.1
184,316 - GFF1331 0.48 -1.4
184,405 + GFF1331 0.55 -4.1
184,405 + GFF1331 0.55 -3.1
184,406 - GFF1331 0.56 -2.4
184,406 - GFF1331 0.56 -0.7
184,406 - GFF1331 0.56 -3.5
184,406 - GFF1331 0.56 -2.6
184,525 + GFF1331 0.66 -2.9
184,525 + GFF1331 0.66 -4.2
184,525 + GFF1331 0.66 -2.6
184,525 + GFF1331 0.66 -2.7
184,525 + GFF1331 0.66 -3.6
184,525 + GFF1331 0.66 -5.2
184,526 - GFF1331 0.66 -1.4
184,526 - GFF1331 0.66 -3.8
184,526 - GFF1331 0.66 -3.3
184,654 + GFF1331 0.78 -5.5
184,654 + GFF1331 0.78 -4.4
184,655 - GFF1331 0.78 -4.8
184,655 - GFF1331 0.78 -5.2
184,655 - GFF1331 0.78 -2.3
184,696 + GFF1331 0.81 -2.4
184,697 - GFF1331 0.81 -1.7
184,697 - GFF1331 0.81 -2.4
184,697 - GFF1331 0.81 -2.1
184,732 + GFF1331 0.85 -1.4
184,795 + -2.6
184,795 + -4.8
184,795 + -3.7
184,796 - -3.8
184,796 - -1.7
184,840 + -1.1
184,840 + -2.7
184,841 - -2.4
184,841 - -3.7
184,841 - -4.0
184,841 - -1.3
184,841 - -2.1
184,841 - -3.7
184,841 - -5.2
184,841 - -6.1
184,918 - -3.8
184,947 + -0.2
184,948 - -1.4
185,086 - GFF1332 0.25 -2.1
185,181 + GFF1332 0.42 -3.7
185,182 - GFF1332 0.42 -3.3
185,182 - GFF1332 0.42 -0.1
185,208 + GFF1332 0.46 -4.6
185,209 - GFF1332 0.47 -4.9
185,209 - GFF1332 0.47 -2.9
185,209 - GFF1332 0.47 -1.7
185,668 - +0.9
185,668 - -0.1
185,668 - -0.1
185,981 + GFF1333 0.23 +0.8
186,134 + GFF1333 0.30 +0.5
186,134 + GFF1333 0.30 +1.4
186,135 - GFF1333 0.30 +1.8
186,135 - GFF1333 0.30 +0.4
186,135 - GFF1333 0.30 +0.6
186,473 + GFF1333 0.46 +1.2
186,473 + GFF1333 0.46 +0.4
186,474 - GFF1333 0.46 +1.1
186,474 - GFF1333 0.46 +0.6
186,474 - GFF1333 0.46 +0.3
186,474 - GFF1333 0.46 +1.6
186,474 - GFF1333 0.46 +0.6

Or see this region's nucleotide sequence