Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1323 and GFF1324 are separated by 15 nucleotides GFF1324 and GFF1325 overlap by 4 nucleotides GFF1325 and GFF1326 are separated by 81 nucleotides
GFF1323 - Uncharacterized ABC transporter, periplasmic component YrbD, at 171,974 to 172,462
GFF1323
GFF1324 - Uncharacterized ABC transporter, permease component YrbE, at 172,478 to 173,260
GFF1324
GFF1325 - Methionine ABC transporter ATP-binding protein, at 173,257 to 174,084
GFF1325
GFF1326 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 174,166 to 175,632
GFF1326
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1 at 172.344 kb on + strand, within GFF1323 at 172.344 kb on + strand, within GFF1323 at 172.344 kb on + strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.604 kb on + strand, within GFF1324 at 172.605 kb on - strand, within GFF1324 at 172.605 kb on - strand, within GFF1324 at 172.605 kb on - strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.038 kb on - strand, within GFF1324 at 173.038 kb on - strand, within GFF1324 at 173.579 kb on + strand, within GFF1325 at 173.579 kb on + strand, within GFF1325 at 173.580 kb on - strand, within GFF1325 at 173.840 kb on + strand, within GFF1325 at 173.840 kb on + strand, within GFF1325 at 173.840 kb on + strand, within GFF1325 at 173.841 kb on - strand, within GFF1325 at 174.126 kb on + strand at 174.126 kb on + strand at 174.126 kb on + strand at 174.164 kb on + strand at 174.165 kb on - strand at 174.308 kb on + strand at 174.308 kb on + strand at 174.308 kb on + strand at 174.308 kb on + strand at 174.308 kb on + strand at 174.309 kb on - strand at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.434 kb on + strand, within GFF1326 at 174.435 kb on - strand, within GFF1326 at 174.435 kb on - strand, within GFF1326 at 174.435 kb on - strand, within GFF1326 at 174.435 kb on - strand, within GFF1326 at 174.435 kb on - strand, within GFF1326 at 174.435 kb on - strand, within GFF1326 at 174.608 kb on + strand, within GFF1326
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 172,344 + GFF1323 0.76 -0.4 172,344 + GFF1323 0.76 -0.8 172,344 + GFF1323 0.76 -0.5 172,345 - GFF1323 0.76 -0.6 172,345 - GFF1323 0.76 -0.0 172,345 - GFF1323 0.76 -0.6 172,345 - GFF1323 0.76 -0.8 172,345 - GFF1323 0.76 -0.2 172,345 - GFF1323 0.76 -0.6 172,345 - GFF1323 0.76 -0.6 172,604 + GFF1324 0.16 -0.7 172,605 - GFF1324 0.16 -0.7 172,605 - GFF1324 0.16 +0.9 172,605 - GFF1324 0.16 -1.8 173,034 + GFF1324 0.71 -1.6 173,034 + GFF1324 0.71 -1.8 173,034 + GFF1324 0.71 -1.1 173,034 + GFF1324 0.71 -1.1 173,034 + GFF1324 0.71 -1.9 173,034 + GFF1324 0.71 -0.8 173,034 + GFF1324 0.71 -0.4 173,034 + GFF1324 0.71 -1.7 173,034 + GFF1324 0.71 -1.2 173,035 - GFF1324 0.71 -1.8 173,035 - GFF1324 0.71 -1.2 173,035 - GFF1324 0.71 -0.7 173,035 - GFF1324 0.71 -0.1 173,035 - GFF1324 0.71 -0.1 173,035 - GFF1324 0.71 -0.5 173,035 - GFF1324 0.71 +0.5 173,035 - GFF1324 0.71 -1.6 173,038 - GFF1324 0.72 -0.7 173,038 - GFF1324 0.72 -0.8 173,579 + GFF1325 0.39 -1.1 173,579 + GFF1325 0.39 -1.0 173,580 - GFF1325 0.39 -1.2 173,840 + GFF1325 0.70 -0.2 173,840 + GFF1325 0.70 -1.0 173,840 + GFF1325 0.70 -0.3 173,841 - GFF1325 0.71 -1.8 174,126 + -0.6 174,126 + -0.1 174,126 + +0.4 174,164 + -0.2 174,165 - +0.3 174,308 + -0.1 174,308 + -0.3 174,308 + +0.7 174,308 + -0.2 174,308 + +0.9 174,309 - +0.8 174,434 + GFF1326 0.18 -0.3 174,434 + GFF1326 0.18 +0.4 174,434 + GFF1326 0.18 +0.9 174,434 + GFF1326 0.18 +0.2 174,434 + GFF1326 0.18 -0.4 174,434 + GFF1326 0.18 +0.7 174,434 + GFF1326 0.18 -0.1 174,434 + GFF1326 0.18 +0.9 174,434 + GFF1326 0.18 -0.4 174,434 + GFF1326 0.18 +0.3 174,435 - GFF1326 0.18 +0.0 174,435 - GFF1326 0.18 -1.1 174,435 - GFF1326 0.18 -0.2 174,435 - GFF1326 0.18 +0.3 174,435 - GFF1326 0.18 -2.1 174,435 - GFF1326 0.18 -0.8 174,608 + GFF1326 0.30 -0.4
Or see this region's nucleotide sequence