Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1321 and GFF1322 are separated by 119 nucleotides GFF1322 and GFF1323 are separated by 113 nucleotides GFF1323 and GFF1324 are separated by 15 nucleotides GFF1324 and GFF1325 overlap by 4 nucleotides
GFF1321 - Uncharacterized ABC transporter, auxiliary component YrbC, at 170,368 to 171,000
GFF1321
GFF1322 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 171,120 to 171,860
GFF1322
GFF1323 - Uncharacterized ABC transporter, periplasmic component YrbD, at 171,974 to 172,462
GFF1323
GFF1324 - Uncharacterized ABC transporter, permease component YrbE, at 172,478 to 173,260
GFF1324
GFF1325 - Methionine ABC transporter ATP-binding protein, at 173,257 to 174,084
GFF1325
Position (kb) 171
172
173 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 171.047 kb on + strand at 171.047 kb on + strand at 171.047 kb on + strand at 171.047 kb on + strand at 171.047 kb on + strand at 171.047 kb on + strand at 171.048 kb on - strand at 171.048 kb on - strand at 171.048 kb on - strand at 171.103 kb on + strand at 171.104 kb on - strand at 171.194 kb on - strand, within GFF1322 at 171.214 kb on + strand, within GFF1322 at 171.214 kb on + strand, within GFF1322 at 171.214 kb on + strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.218 kb on + strand, within GFF1322 at 171.218 kb on + strand, within GFF1322 at 171.219 kb on - strand, within GFF1322 at 171.219 kb on - strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.410 kb on - strand, within GFF1322 at 171.410 kb on - strand, within GFF1322 at 171.410 kb on - strand, within GFF1322 at 171.410 kb on - strand, within GFF1322 at 171.410 kb on - strand, within GFF1322 at 171.410 kb on - strand, within GFF1322 at 171.664 kb on + strand, within GFF1322 at 171.664 kb on + strand, within GFF1322 at 171.718 kb on + strand, within GFF1322 at 171.718 kb on + strand, within GFF1322 at 171.719 kb on - strand, within GFF1322 at 171.719 kb on - strand, within GFF1322 at 171.719 kb on - strand, within GFF1322 at 171.902 kb on + strand at 171.902 kb on + strand at 171.902 kb on + strand at 171.915 kb on + strand at 171.915 kb on + strand at 171.915 kb on + strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.937 kb on + strand at 171.937 kb on + strand at 171.937 kb on + strand at 171.938 kb on - strand at 171.938 kb on - strand at 171.975 kb on + strand at 171.975 kb on + strand at 171.975 kb on + strand at 171.976 kb on - strand at 171.976 kb on - strand at 171.976 kb on - strand at 171.976 kb on - strand at 172.134 kb on + strand, within GFF1323 at 172.134 kb on + strand, within GFF1323 at 172.134 kb on + strand, within GFF1323 at 172.134 kb on + strand, within GFF1323 at 172.134 kb on + strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.194 kb on + strand, within GFF1323 at 172.195 kb on - strand, within GFF1323 at 172.195 kb on - strand, within GFF1323 at 172.195 kb on - strand, within GFF1323 at 172.195 kb on - strand, within GFF1323 at 172.195 kb on - strand, within GFF1323 at 172.344 kb on + strand, within GFF1323 at 172.344 kb on + strand, within GFF1323 at 172.344 kb on + strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.604 kb on + strand, within GFF1324 at 172.605 kb on - strand, within GFF1324 at 172.605 kb on - strand, within GFF1324 at 172.605 kb on - strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.038 kb on - strand, within GFF1324 at 173.038 kb on - strand, within GFF1324
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 171,047 + +0.1 171,047 + -0.9 171,047 + +1.5 171,047 + +0.2 171,047 + +1.3 171,047 + +0.4 171,048 - -0.2 171,048 - +0.3 171,048 - -0.6 171,103 + +0.7 171,104 - -0.4 171,194 - GFF1322 0.10 -1.2 171,214 + GFF1322 0.13 -0.4 171,214 + GFF1322 0.13 -1.1 171,214 + GFF1322 0.13 -1.9 171,215 - GFF1322 0.13 -0.6 171,215 - GFF1322 0.13 -0.1 171,215 - GFF1322 0.13 +1.1 171,215 - GFF1322 0.13 -0.7 171,215 - GFF1322 0.13 -0.8 171,215 - GFF1322 0.13 +0.5 171,215 - GFF1322 0.13 -0.9 171,215 - GFF1322 0.13 -0.7 171,215 - GFF1322 0.13 -1.1 171,218 + GFF1322 0.13 -2.8 171,218 + GFF1322 0.13 -0.3 171,219 - GFF1322 0.13 +0.0 171,219 - GFF1322 0.13 +0.0 171,409 + GFF1322 0.39 -0.4 171,409 + GFF1322 0.39 -1.2 171,409 + GFF1322 0.39 -0.5 171,409 + GFF1322 0.39 -1.1 171,409 + GFF1322 0.39 -1.2 171,409 + GFF1322 0.39 -1.0 171,409 + GFF1322 0.39 +0.6 171,409 + GFF1322 0.39 -1.0 171,409 + GFF1322 0.39 +1.1 171,410 - GFF1322 0.39 -1.0 171,410 - GFF1322 0.39 -0.7 171,410 - GFF1322 0.39 -0.9 171,410 - GFF1322 0.39 -0.1 171,410 - GFF1322 0.39 -0.6 171,410 - GFF1322 0.39 -1.3 171,664 + GFF1322 0.73 -0.1 171,664 + GFF1322 0.73 -0.8 171,718 + GFF1322 0.81 +0.9 171,718 + GFF1322 0.81 -0.8 171,719 - GFF1322 0.81 -1.6 171,719 - GFF1322 0.81 -2.6 171,719 - GFF1322 0.81 -1.0 171,902 + +1.0 171,902 + +0.2 171,902 + +0.6 171,915 + +0.1 171,915 + -0.1 171,915 + +0.2 171,916 - +0.0 171,916 - +0.2 171,916 - +0.2 171,916 - +0.6 171,916 - +0.1 171,916 - +1.7 171,916 - +0.9 171,916 - +0.0 171,916 - +0.2 171,916 - -1.0 171,937 + +0.1 171,937 + +0.9 171,937 + +0.2 171,938 - -0.3 171,938 - -0.1 171,975 + -0.1 171,975 + +0.2 171,975 + -0.1 171,976 - +0.3 171,976 - -1.3 171,976 - +0.1 171,976 - +0.3 172,134 + GFF1323 0.33 +1.9 172,134 + GFF1323 0.33 -1.4 172,134 + GFF1323 0.33 -0.3 172,134 + GFF1323 0.33 -0.3 172,134 + GFF1323 0.33 -1.1 172,135 - GFF1323 0.33 -1.3 172,135 - GFF1323 0.33 -1.4 172,135 - GFF1323 0.33 -1.2 172,135 - GFF1323 0.33 -0.7 172,135 - GFF1323 0.33 -1.1 172,135 - GFF1323 0.33 -2.1 172,135 - GFF1323 0.33 +0.0 172,194 + GFF1323 0.45 -1.0 172,195 - GFF1323 0.45 +0.4 172,195 - GFF1323 0.45 -1.3 172,195 - GFF1323 0.45 +0.3 172,195 - GFF1323 0.45 -0.8 172,195 - GFF1323 0.45 -0.6 172,344 + GFF1323 0.76 -0.4 172,344 + GFF1323 0.76 -0.8 172,344 + GFF1323 0.76 -0.5 172,345 - GFF1323 0.76 -0.6 172,345 - GFF1323 0.76 -0.0 172,345 - GFF1323 0.76 -0.6 172,345 - GFF1323 0.76 -0.8 172,345 - GFF1323 0.76 -0.2 172,345 - GFF1323 0.76 -0.6 172,345 - GFF1323 0.76 -0.6 172,604 + GFF1324 0.16 -0.7 172,605 - GFF1324 0.16 -0.7 172,605 - GFF1324 0.16 +0.9 172,605 - GFF1324 0.16 -1.8 173,034 + GFF1324 0.71 -1.6 173,034 + GFF1324 0.71 -1.8 173,034 + GFF1324 0.71 -1.1 173,034 + GFF1324 0.71 -1.1 173,034 + GFF1324 0.71 -1.9 173,034 + GFF1324 0.71 -0.8 173,034 + GFF1324 0.71 -0.4 173,034 + GFF1324 0.71 -1.7 173,034 + GFF1324 0.71 -1.2 173,035 - GFF1324 0.71 -1.8 173,035 - GFF1324 0.71 -1.2 173,035 - GFF1324 0.71 -0.7 173,035 - GFF1324 0.71 -0.1 173,035 - GFF1324 0.71 -0.1 173,035 - GFF1324 0.71 -0.5 173,035 - GFF1324 0.71 +0.5 173,035 - GFF1324 0.71 -1.6 173,038 - GFF1324 0.72 -0.7 173,038 - GFF1324 0.72 -0.8
Or see this region's nucleotide sequence