Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1239

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1237 and GFF1238 are separated by 5 nucleotidesGFF1238 and GFF1239 are separated by 72 nucleotidesGFF1239 and GFF1240 are separated by 8 nucleotidesGFF1240 and GFF1241 are separated by 62 nucleotides GFF1237 - FIG00932538: hypothetical protein, at 96,972 to 97,817 GFF1237 GFF1238 - Integral membrane protein, at 97,823 to 98,704 GFF1238 GFF1239 - FIG00933538: hypothetical protein, at 98,777 to 99,202 GFF1239 GFF1240 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 99,211 to 99,942 GFF1240 GFF1241 - ATP-dependent DNA ligase (EC 6.5.1.1) LigC, at 100,005 to 101,792 GFF1241 Position (kb) 98 99 100Strain fitness (log2 ratio) -1 0 1 2at 97.989 kb on + strand, within GFF1238at 97.989 kb on + strand, within GFF1238at 97.989 kb on + strand, within GFF1238at 97.990 kb on - strand, within GFF1238at 98.004 kb on + strand, within GFF1238at 98.004 kb on + strand, within GFF1238at 98.004 kb on + strand, within GFF1238at 98.004 kb on + strand, within GFF1238at 98.005 kb on - strand, within GFF1238at 98.005 kb on - strand, within GFF1238at 98.133 kb on + strand, within GFF1238at 98.133 kb on + strand, within GFF1238at 98.133 kb on + strand, within GFF1238at 98.133 kb on + strand, within GFF1238at 98.134 kb on - strand, within GFF1238at 98.134 kb on - strand, within GFF1238at 98.136 kb on + strand, within GFF1238at 98.193 kb on + strand, within GFF1238at 98.194 kb on - strand, within GFF1238at 98.227 kb on - strand, within GFF1238at 98.472 kb on + strand, within GFF1238at 98.472 kb on + strand, within GFF1238at 98.472 kb on + strand, within GFF1238at 98.472 kb on + strand, within GFF1238at 98.472 kb on + strand, within GFF1238at 98.473 kb on - strand, within GFF1238at 98.475 kb on + strand, within GFF1238at 98.476 kb on - strand, within GFF1238at 98.476 kb on - strand, within GFF1238at 98.476 kb on - strand, within GFF1238at 98.476 kb on - strand, within GFF1238at 98.476 kb on - strand, within GFF1238at 98.853 kb on + strand, within GFF1239at 98.853 kb on + strand, within GFF1239at 98.853 kb on + strand, within GFF1239at 98.854 kb on - strand, within GFF1239at 98.854 kb on - strand, within GFF1239at 98.880 kb on + strand, within GFF1239at 98.881 kb on - strand, within GFF1239at 99.018 kb on + strand, within GFF1239at 99.019 kb on - strand, within GFF1239at 99.019 kb on - strand, within GFF1239at 99.183 kb on + strandat 99.183 kb on + strandat 99.183 kb on + strandat 99.183 kb on + strandat 99.183 kb on + strandat 99.184 kb on - strandat 99.184 kb on - strandat 99.184 kb on - strandat 99.194 kb on + strandat 99.194 kb on + strandat 99.194 kb on + strandat 99.195 kb on - strandat 99.195 kb on - strandat 99.195 kb on - strandat 99.953 kb on + strandat 99.953 kb on + strandat 99.953 kb on + strandat 99.953 kb on + strandat 99.953 kb on + strandat 99.953 kb on + strandat 99.954 kb on - strandat 99.954 kb on - strandat 99.954 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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97,989 + GFF1238 0.19 +1.8
97,989 + GFF1238 0.19 -0.2
97,989 + GFF1238 0.19 -0.2
97,990 - GFF1238 0.19 -0.1
98,004 + GFF1238 0.21 +0.4
98,004 + GFF1238 0.21 -0.5
98,004 + GFF1238 0.21 +0.6
98,004 + GFF1238 0.21 +0.3
98,005 - GFF1238 0.21 -0.3
98,005 - GFF1238 0.21 -0.2
98,133 + GFF1238 0.35 +0.2
98,133 + GFF1238 0.35 +0.9
98,133 + GFF1238 0.35 -0.2
98,133 + GFF1238 0.35 +0.7
98,134 - GFF1238 0.35 +0.9
98,134 - GFF1238 0.35 +1.5
98,136 + GFF1238 0.35 -0.1
98,193 + GFF1238 0.42 -0.8
98,194 - GFF1238 0.42 -1.4
98,227 - GFF1238 0.46 +0.3
98,472 + GFF1238 0.74 -0.1
98,472 + GFF1238 0.74 +0.9
98,472 + GFF1238 0.74 -0.4
98,472 + GFF1238 0.74 +1.1
98,472 + GFF1238 0.74 +0.3
98,473 - GFF1238 0.74 +0.1
98,475 + GFF1238 0.74 -1.1
98,476 - GFF1238 0.74 +0.3
98,476 - GFF1238 0.74 -0.6
98,476 - GFF1238 0.74 -0.5
98,476 - GFF1238 0.74 -1.6
98,476 - GFF1238 0.74 +0.3
98,853 + GFF1239 0.18 +0.5
98,853 + GFF1239 0.18 -1.1
98,853 + GFF1239 0.18 -0.5
98,854 - GFF1239 0.18 +0.3
98,854 - GFF1239 0.18 -0.7
98,880 + GFF1239 0.24 -0.0
98,881 - GFF1239 0.24 -0.4
99,018 + GFF1239 0.57 -0.0
99,019 - GFF1239 0.57 -0.3
99,019 - GFF1239 0.57 -0.3
99,183 + -0.3
99,183 + +1.9
99,183 + +0.5
99,183 + -0.5
99,183 + -0.5
99,184 - +0.9
99,184 - +0.3
99,184 - +1.1
99,194 + -0.6
99,194 + +1.1
99,194 + +0.2
99,195 - +0.2
99,195 - +0.4
99,195 - +0.2
99,953 + -0.1
99,953 + +0.9
99,953 + -1.0
99,953 + +0.4
99,953 + -0.2
99,953 + -0.1
99,954 - -0.9
99,954 - +1.6
99,954 - -0.3

Or see this region's nucleotide sequence