Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1227 and GFF1228 are separated by 37 nucleotides GFF1228 and GFF1229 are separated by 10 nucleotides GFF1229 and GFF1230 are separated by 74 nucleotides GFF1230 and GFF1231 are separated by 102 nucleotides
GFF1227 - Carboxyl-terminal protease (EC 3.4.21.102), at 89,395 to 90,876
GFF1227
GFF1228 - Sulfur carrier protein adenylyltransferase ThiF, at 90,914 to 91,666
GFF1228
GFF1229 - Thermonuclease family protein, at 91,677 to 92,102
GFF1229
GFF1230 - hypothetical protein, at 92,177 to 92,398
GFF1230
GFF1231 - hypothetical protein, at 92,501 to 93,073
GFF1231
Position (kb) 90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 90.061 kb on + strand, within GFF1227 at 90.062 kb on - strand, within GFF1227 at 90.239 kb on - strand, within GFF1227 at 90.487 kb on + strand, within GFF1227 at 90.487 kb on + strand, within GFF1227 at 90.487 kb on + strand, within GFF1227 at 90.487 kb on + strand, within GFF1227 at 90.487 kb on + strand, within GFF1227 at 91.049 kb on + strand, within GFF1228 at 91.050 kb on - strand, within GFF1228 at 91.050 kb on - strand, within GFF1228 at 91.050 kb on - strand, within GFF1228 at 91.050 kb on - strand, within GFF1228 at 91.424 kb on + strand, within GFF1228 at 91.424 kb on + strand, within GFF1228 at 91.816 kb on + strand, within GFF1229 at 91.817 kb on - strand, within GFF1229 at 92.098 kb on + strand at 92.098 kb on + strand at 92.098 kb on + strand at 92.098 kb on + strand at 92.099 kb on - strand at 92.099 kb on - strand at 92.322 kb on + strand, within GFF1230 at 92.322 kb on + strand, within GFF1230 at 92.322 kb on + strand, within GFF1230 at 92.322 kb on + strand, within GFF1230 at 92.323 kb on - strand, within GFF1230 at 92.323 kb on - strand, within GFF1230 at 92.337 kb on + strand, within GFF1230
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 90,061 + GFF1227 0.45 -1.7 90,062 - GFF1227 0.45 -1.1 90,239 - GFF1227 0.57 -1.7 90,487 + GFF1227 0.74 -0.1 90,487 + GFF1227 0.74 -1.7 90,487 + GFF1227 0.74 -2.7 90,487 + GFF1227 0.74 -1.7 90,487 + GFF1227 0.74 -1.7 91,049 + GFF1228 0.18 -1.4 91,050 - GFF1228 0.18 -1.9 91,050 - GFF1228 0.18 -2.7 91,050 - GFF1228 0.18 -2.9 91,050 - GFF1228 0.18 -1.7 91,424 + GFF1228 0.68 -2.1 91,424 + GFF1228 0.68 -3.3 91,816 + GFF1229 0.33 -0.3 91,817 - GFF1229 0.33 -0.4 92,098 + -0.1 92,098 + +0.6 92,098 + +1.3 92,098 + +0.3 92,099 - +0.1 92,099 - -0.0 92,322 + GFF1230 0.65 -0.4 92,322 + GFF1230 0.65 +0.2 92,322 + GFF1230 0.65 +0.1 92,322 + GFF1230 0.65 +0.6 92,323 - GFF1230 0.66 +0.4 92,323 - GFF1230 0.66 +0.0 92,337 + GFF1230 0.72 +1.3
Or see this region's nucleotide sequence