Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1228

Experiment: Ying_Others16 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1227 and GFF1228 are separated by 37 nucleotidesGFF1228 and GFF1229 are separated by 10 nucleotidesGFF1229 and GFF1230 are separated by 74 nucleotidesGFF1230 and GFF1231 are separated by 102 nucleotides GFF1227 - Carboxyl-terminal protease (EC 3.4.21.102), at 89,395 to 90,876 GFF1227 GFF1228 - Sulfur carrier protein adenylyltransferase ThiF, at 90,914 to 91,666 GFF1228 GFF1229 - Thermonuclease family protein, at 91,677 to 92,102 GFF1229 GFF1230 - hypothetical protein, at 92,177 to 92,398 GFF1230 GFF1231 - hypothetical protein, at 92,501 to 93,073 GFF1231 Position (kb) 90 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1at 90.061 kb on + strand, within GFF1227at 90.062 kb on - strand, within GFF1227at 90.239 kb on - strand, within GFF1227at 90.487 kb on + strand, within GFF1227at 90.487 kb on + strand, within GFF1227at 90.487 kb on + strand, within GFF1227at 90.487 kb on + strand, within GFF1227at 90.487 kb on + strand, within GFF1227at 91.049 kb on + strand, within GFF1228at 91.050 kb on - strand, within GFF1228at 91.050 kb on - strand, within GFF1228at 91.050 kb on - strand, within GFF1228at 91.050 kb on - strand, within GFF1228at 91.424 kb on + strand, within GFF1228at 91.424 kb on + strand, within GFF1228at 91.816 kb on + strand, within GFF1229at 91.817 kb on - strand, within GFF1229at 92.098 kb on + strandat 92.098 kb on + strandat 92.098 kb on + strandat 92.098 kb on + strandat 92.099 kb on - strandat 92.099 kb on - strandat 92.322 kb on + strand, within GFF1230at 92.322 kb on + strand, within GFF1230at 92.322 kb on + strand, within GFF1230at 92.322 kb on + strand, within GFF1230at 92.323 kb on - strand, within GFF1230at 92.323 kb on - strand, within GFF1230at 92.337 kb on + strand, within GFF1230

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
remove
90,061 + GFF1227 0.45 -1.7
90,062 - GFF1227 0.45 -1.1
90,239 - GFF1227 0.57 -1.7
90,487 + GFF1227 0.74 -0.1
90,487 + GFF1227 0.74 -1.7
90,487 + GFF1227 0.74 -2.7
90,487 + GFF1227 0.74 -1.7
90,487 + GFF1227 0.74 -1.7
91,049 + GFF1228 0.18 -1.4
91,050 - GFF1228 0.18 -1.9
91,050 - GFF1228 0.18 -2.7
91,050 - GFF1228 0.18 -2.9
91,050 - GFF1228 0.18 -1.7
91,424 + GFF1228 0.68 -2.1
91,424 + GFF1228 0.68 -3.3
91,816 + GFF1229 0.33 -0.3
91,817 - GFF1229 0.33 -0.4
92,098 + -0.1
92,098 + +0.6
92,098 + +1.3
92,098 + +0.3
92,099 - +0.1
92,099 - -0.0
92,322 + GFF1230 0.65 -0.4
92,322 + GFF1230 0.65 +0.2
92,322 + GFF1230 0.65 +0.1
92,322 + GFF1230 0.65 +0.6
92,323 - GFF1230 0.66 +0.4
92,323 - GFF1230 0.66 +0.0
92,337 + GFF1230 0.72 +1.3

Or see this region's nucleotide sequence