Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1226 and GFF1227 are separated by 152 nucleotides GFF1227 and GFF1228 are separated by 37 nucleotides GFF1228 and GFF1229 are separated by 10 nucleotides
GFF1226 - Phosphoglycerate mutase (EC 5.4.2.1), at 88,499 to 89,242
GFF1226
GFF1227 - Carboxyl-terminal protease (EC 3.4.21.102), at 89,395 to 90,876
GFF1227
GFF1228 - Sulfur carrier protein adenylyltransferase ThiF, at 90,914 to 91,666
GFF1228
GFF1229 - Thermonuclease family protein, at 91,677 to 92,102
GFF1229
Position (kb) 89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 89.274 kb on + strand at 89.274 kb on + strand at 89.274 kb on + strand at 89.275 kb on - strand at 89.275 kb on - strand at 89.275 kb on - strand at 89.275 kb on - strand at 89.275 kb on - strand at 89.275 kb on - strand at 89.275 kb on - strand at 89.275 kb on - strand at 89.324 kb on + strand at 89.324 kb on + strand at 89.324 kb on + strand at 89.324 kb on + strand at 89.324 kb on + strand at 89.324 kb on + strand at 89.324 kb on + strand at 89.324 kb on + strand at 89.324 kb on + strand at 89.324 kb on + strand at 89.324 kb on + strand at 89.324 kb on + strand at 89.324 kb on + strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.325 kb on - strand at 89.326 kb on + strand at 89.326 kb on + strand at 89.326 kb on + strand at 89.327 kb on - strand at 89.327 kb on - strand at 89.327 kb on - strand at 89.368 kb on + strand at 89.369 kb on - strand at 89.369 kb on - strand at 89.369 kb on - strand at 89.376 kb on + strand at 89.376 kb on + strand at 89.377 kb on - strand at 89.377 kb on - strand at 89.392 kb on + strand at 89.896 kb on + strand, within GFF1227 at 89.897 kb on - strand, within GFF1227 at 89.897 kb on - strand, within GFF1227 at 90.061 kb on + strand, within GFF1227 at 90.062 kb on - strand, within GFF1227 at 90.239 kb on - strand, within GFF1227 at 90.487 kb on + strand, within GFF1227 at 90.487 kb on + strand, within GFF1227 at 90.487 kb on + strand, within GFF1227 at 90.487 kb on + strand, within GFF1227 at 90.487 kb on + strand, within GFF1227 at 91.049 kb on + strand, within GFF1228 at 91.050 kb on - strand, within GFF1228 at 91.050 kb on - strand, within GFF1228 at 91.050 kb on - strand, within GFF1228 at 91.050 kb on - strand, within GFF1228 at 91.424 kb on + strand, within GFF1228 at 91.424 kb on + strand, within GFF1228 at 91.816 kb on + strand, within GFF1229 at 91.817 kb on - strand, within GFF1229
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 89,274 + +0.0 89,274 + +1.5 89,274 + +0.2 89,275 - +0.1 89,275 - -0.4 89,275 - +0.8 89,275 - -0.1 89,275 - +0.1 89,275 - -0.4 89,275 - -0.1 89,275 - +0.9 89,324 + +0.3 89,324 + -0.2 89,324 + +0.9 89,324 + +0.2 89,324 + -2.8 89,324 + +0.4 89,324 + -1.0 89,324 + -0.2 89,324 + +0.1 89,324 + -0.1 89,324 + -0.3 89,324 + +0.2 89,324 + -0.3 89,325 - -0.2 89,325 - +0.3 89,325 - +0.3 89,325 - -0.7 89,325 - -0.0 89,325 - -0.3 89,325 - +0.0 89,325 - +0.1 89,325 - +0.4 89,325 - -1.1 89,325 - -0.1 89,325 - +0.2 89,325 - +1.0 89,325 - +1.0 89,325 - +1.2 89,325 - -0.4 89,325 - +0.0 89,326 + +1.1 89,326 + -1.0 89,326 + -0.2 89,327 - -1.3 89,327 - -0.9 89,327 - -0.1 89,368 + +0.9 89,369 - -1.5 89,369 - -0.8 89,369 - -1.0 89,376 + -1.3 89,376 + -1.2 89,377 - -2.7 89,377 - -1.9 89,392 + -2.1 89,896 + GFF1227 0.34 -1.7 89,897 - GFF1227 0.34 -1.1 89,897 - GFF1227 0.34 -1.1 90,061 + GFF1227 0.45 -1.7 90,062 - GFF1227 0.45 -1.1 90,239 - GFF1227 0.57 -1.7 90,487 + GFF1227 0.74 -0.1 90,487 + GFF1227 0.74 -1.7 90,487 + GFF1227 0.74 -2.7 90,487 + GFF1227 0.74 -1.7 90,487 + GFF1227 0.74 -1.7 91,049 + GFF1228 0.18 -1.4 91,050 - GFF1228 0.18 -1.9 91,050 - GFF1228 0.18 -2.7 91,050 - GFF1228 0.18 -2.9 91,050 - GFF1228 0.18 -1.7 91,424 + GFF1228 0.68 -2.1 91,424 + GFF1228 0.68 -3.3 91,816 + GFF1229 0.33 -0.3 91,817 - GFF1229 0.33 -0.4
Or see this region's nucleotide sequence