Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS15515

Experiment: D-Glucose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS15510 and HMPREF1181_RS15515 are separated by 182 nucleotidesHMPREF1181_RS15515 and HMPREF1181_RS15520 are separated by 49 nucleotides HMPREF1181_RS15510: HMPREF1181_RS15510 - malonyl-ACP O-methyltransferase BioC, at 50,317 to 51,276 _RS15510 HMPREF1181_RS15515: HMPREF1181_RS15515 - ATP-dependent dethiobiotin synthetase BioD, at 51,459 to 52,121 _RS15515 HMPREF1181_RS15520: HMPREF1181_RS15520 - glycosyltransferase, at 52,171 to 53,343 _RS15520 Position (kb) 51 52 53Strain fitness (log2 ratio) -1 0 1at 51.302 kb on + strandat 51.344 kb on + strandat 51.395 kb on + strandat 51.409 kb on + strandat 51.438 kb on + strandat 52.097 kb on - strandat 52.100 kb on + strandat 52.101 kb on - strandat 52.120 kb on - strandat 52.120 kb on - strandat 52.154 kb on - strandat 52.154 kb on - strandat 52.154 kb on - strandat 52.163 kb on + strandat 52.164 kb on - strandat 52.183 kb on - strandat 52.192 kb on - strandat 52.205 kb on + strandat 52.206 kb on - strandat 52.209 kb on - strandat 52.249 kb on + strandat 52.252 kb on + strandat 52.264 kb on + strandat 52.690 kb on + strand, within HMPREF1181_RS15520at 52.691 kb on - strand, within HMPREF1181_RS15520at 52.692 kb on + strand, within HMPREF1181_RS15520at 52.693 kb on - strand, within HMPREF1181_RS15520at 52.795 kb on + strand, within HMPREF1181_RS15520at 52.796 kb on - strand, within HMPREF1181_RS15520at 52.840 kb on + strand, within HMPREF1181_RS15520at 53.107 kb on - strand, within HMPREF1181_RS15520

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 10 mM (C)
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51,302 + -1.3
51,344 + -1.0
51,395 + -0.7
51,409 + -0.1
51,438 + -0.7
52,097 - -1.1
52,100 + -0.7
52,101 - -0.5
52,120 - -1.4
52,120 - +0.7
52,154 - +1.2
52,154 - +0.7
52,154 - +0.8
52,163 + -0.2
52,164 - +1.2
52,183 - +0.8
52,192 - +0.9
52,205 + +0.7
52,206 - -0.8
52,209 - +0.3
52,249 + -0.8
52,252 + +1.2
52,264 + +0.5
52,690 + HMPREF1181_RS15520 0.44 -0.8
52,691 - HMPREF1181_RS15520 0.44 -0.6
52,692 + HMPREF1181_RS15520 0.44 +0.5
52,693 - HMPREF1181_RS15520 0.45 -0.0
52,795 + HMPREF1181_RS15520 0.53 -0.4
52,796 - HMPREF1181_RS15520 0.53 +0.1
52,840 + HMPREF1181_RS15520 0.57 -0.1
53,107 - HMPREF1181_RS15520 0.80 +0.5

Or see this region's nucleotide sequence