Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS02065

Experiment: D-Glucose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS02060 and HMPREF1181_RS02065 are separated by 281 nucleotidesHMPREF1181_RS02065 and HMPREF1181_RS02070 are separated by 114 nucleotides HMPREF1181_RS02060: HMPREF1181_RS02060 - ribokinase, at 505,358 to 506,266 _RS02060 HMPREF1181_RS02065: HMPREF1181_RS02065 - hypothetical protein, at 506,548 to 508,104 _RS02065 HMPREF1181_RS02070: HMPREF1181_RS02070 - DNA polymerase I, at 508,219 to 511,077 _RS02070 Position (kb) 506 507 508 509Strain fitness (log2 ratio) -2 -1 0 1at 505.553 kb on + strand, within HMPREF1181_RS02060at 505.566 kb on - strand, within HMPREF1181_RS02060at 505.614 kb on - strand, within HMPREF1181_RS02060at 505.779 kb on - strand, within HMPREF1181_RS02060at 505.779 kb on - strand, within HMPREF1181_RS02060at 505.781 kb on + strand, within HMPREF1181_RS02060at 505.821 kb on + strand, within HMPREF1181_RS02060at 505.877 kb on + strand, within HMPREF1181_RS02060at 505.973 kb on - strand, within HMPREF1181_RS02060at 505.983 kb on - strand, within HMPREF1181_RS02060at 506.029 kb on + strand, within HMPREF1181_RS02060at 506.029 kb on + strand, within HMPREF1181_RS02060at 506.224 kb on + strandat 506.233 kb on + strandat 506.233 kb on + strandat 506.246 kb on + strandat 506.246 kb on + strandat 506.246 kb on + strandat 506.271 kb on - strandat 506.291 kb on - strandat 506.303 kb on - strandat 506.320 kb on + strandat 506.343 kb on - strandat 506.345 kb on + strandat 506.349 kb on + strandat 506.471 kb on - strandat 506.563 kb on + strandat 506.568 kb on + strandat 506.569 kb on - strandat 506.569 kb on - strandat 506.575 kb on - strandat 506.580 kb on - strandat 506.648 kb on - strandat 506.650 kb on - strandat 506.653 kb on - strandat 506.689 kb on - strandat 506.789 kb on + strand, within HMPREF1181_RS02065at 506.801 kb on + strand, within HMPREF1181_RS02065at 506.843 kb on - strand, within HMPREF1181_RS02065at 506.843 kb on - strand, within HMPREF1181_RS02065at 506.853 kb on - strand, within HMPREF1181_RS02065at 506.865 kb on - strand, within HMPREF1181_RS02065at 506.896 kb on - strand, within HMPREF1181_RS02065at 506.899 kb on + strand, within HMPREF1181_RS02065at 506.901 kb on + strand, within HMPREF1181_RS02065at 506.902 kb on - strand, within HMPREF1181_RS02065at 506.902 kb on - strand, within HMPREF1181_RS02065at 506.902 kb on - strand, within HMPREF1181_RS02065at 506.973 kb on - strand, within HMPREF1181_RS02065at 507.024 kb on + strand, within HMPREF1181_RS02065at 507.055 kb on + strand, within HMPREF1181_RS02065at 507.055 kb on + strand, within HMPREF1181_RS02065at 507.063 kb on - strand, within HMPREF1181_RS02065at 507.067 kb on - strand, within HMPREF1181_RS02065at 507.067 kb on - strand, within HMPREF1181_RS02065at 507.127 kb on + strand, within HMPREF1181_RS02065at 507.130 kb on - strand, within HMPREF1181_RS02065at 507.130 kb on - strand, within HMPREF1181_RS02065at 507.141 kb on + strand, within HMPREF1181_RS02065at 507.142 kb on - strand, within HMPREF1181_RS02065at 507.179 kb on + strand, within HMPREF1181_RS02065at 507.195 kb on + strand, within HMPREF1181_RS02065at 507.208 kb on - strand, within HMPREF1181_RS02065at 507.274 kb on + strand, within HMPREF1181_RS02065at 507.287 kb on + strand, within HMPREF1181_RS02065at 507.288 kb on - strand, within HMPREF1181_RS02065at 507.348 kb on + strand, within HMPREF1181_RS02065at 507.348 kb on + strand, within HMPREF1181_RS02065at 507.380 kb on - strand, within HMPREF1181_RS02065at 507.384 kb on - strand, within HMPREF1181_RS02065at 507.384 kb on - strand, within HMPREF1181_RS02065at 507.413 kb on + strand, within HMPREF1181_RS02065at 507.414 kb on - strand, within HMPREF1181_RS02065at 507.426 kb on + strand, within HMPREF1181_RS02065at 507.431 kb on - strand, within HMPREF1181_RS02065at 507.438 kb on + strand, within HMPREF1181_RS02065at 507.508 kb on + strand, within HMPREF1181_RS02065at 507.509 kb on - strand, within HMPREF1181_RS02065at 507.523 kb on + strand, within HMPREF1181_RS02065at 507.548 kb on + strand, within HMPREF1181_RS02065at 507.553 kb on - strand, within HMPREF1181_RS02065at 507.558 kb on + strand, within HMPREF1181_RS02065at 507.645 kb on - strand, within HMPREF1181_RS02065at 507.645 kb on - strand, within HMPREF1181_RS02065at 507.654 kb on + strand, within HMPREF1181_RS02065at 507.655 kb on - strand, within HMPREF1181_RS02065at 507.760 kb on - strand, within HMPREF1181_RS02065at 507.762 kb on + strand, within HMPREF1181_RS02065at 507.778 kb on - strand, within HMPREF1181_RS02065at 507.803 kb on + strand, within HMPREF1181_RS02065at 507.803 kb on + strand, within HMPREF1181_RS02065at 507.809 kb on - strand, within HMPREF1181_RS02065at 507.811 kb on - strand, within HMPREF1181_RS02065at 507.856 kb on - strand, within HMPREF1181_RS02065at 508.074 kb on - strandat 508.074 kb on - strandat 508.091 kb on + strandat 508.153 kb on + strandat 508.153 kb on + strandat 508.198 kb on - strandat 508.215 kb on + strandat 508.604 kb on + strand, within HMPREF1181_RS02070at 508.840 kb on - strand, within HMPREF1181_RS02070at 509.087 kb on + strand, within HMPREF1181_RS02070at 509.087 kb on + strand, within HMPREF1181_RS02070

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 10 mM (C)
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505,553 + HMPREF1181_RS02060 0.21 +1.1
505,566 - HMPREF1181_RS02060 0.23 -0.1
505,614 - HMPREF1181_RS02060 0.28 -0.2
505,779 - HMPREF1181_RS02060 0.46 -0.7
505,779 - HMPREF1181_RS02060 0.46 -0.1
505,781 + HMPREF1181_RS02060 0.47 -1.3
505,821 + HMPREF1181_RS02060 0.51 +0.2
505,877 + HMPREF1181_RS02060 0.57 +0.7
505,973 - HMPREF1181_RS02060 0.68 -1.2
505,983 - HMPREF1181_RS02060 0.69 +0.6
506,029 + HMPREF1181_RS02060 0.74 +0.0
506,029 + HMPREF1181_RS02060 0.74 -0.9
506,224 + +0.7
506,233 + -0.9
506,233 + -1.2
506,246 + +0.4
506,246 + -0.9
506,246 + +1.4
506,271 - +0.5
506,291 - -1.6
506,303 - -1.0
506,320 + +0.6
506,343 - +0.4
506,345 + +0.8
506,349 + +0.5
506,471 - +0.0
506,563 + +1.2
506,568 + +1.1
506,569 - -0.4
506,569 - -1.3
506,575 - -1.3
506,580 - -0.7
506,648 - +0.6
506,650 - +0.3
506,653 - +0.7
506,689 - -1.0
506,789 + HMPREF1181_RS02065 0.15 +0.9
506,801 + HMPREF1181_RS02065 0.16 +0.4
506,843 - HMPREF1181_RS02065 0.19 -1.3
506,843 - HMPREF1181_RS02065 0.19 +1.0
506,853 - HMPREF1181_RS02065 0.20 +0.6
506,865 - HMPREF1181_RS02065 0.20 +0.2
506,896 - HMPREF1181_RS02065 0.22 +0.9
506,899 + HMPREF1181_RS02065 0.23 +0.4
506,901 + HMPREF1181_RS02065 0.23 +0.1
506,902 - HMPREF1181_RS02065 0.23 -1.0
506,902 - HMPREF1181_RS02065 0.23 +1.4
506,902 - HMPREF1181_RS02065 0.23 +1.0
506,973 - HMPREF1181_RS02065 0.27 +0.3
507,024 + HMPREF1181_RS02065 0.31 +0.7
507,055 + HMPREF1181_RS02065 0.33 +1.2
507,055 + HMPREF1181_RS02065 0.33 -0.5
507,063 - HMPREF1181_RS02065 0.33 +0.9
507,067 - HMPREF1181_RS02065 0.33 -0.1
507,067 - HMPREF1181_RS02065 0.33 +1.4
507,127 + HMPREF1181_RS02065 0.37 -0.8
507,130 - HMPREF1181_RS02065 0.37 +0.1
507,130 - HMPREF1181_RS02065 0.37 +0.7
507,141 + HMPREF1181_RS02065 0.38 -0.2
507,142 - HMPREF1181_RS02065 0.38 +0.1
507,179 + HMPREF1181_RS02065 0.41 +0.7
507,195 + HMPREF1181_RS02065 0.42 +0.6
507,208 - HMPREF1181_RS02065 0.42 -0.5
507,274 + HMPREF1181_RS02065 0.47 +0.3
507,287 + HMPREF1181_RS02065 0.47 +1.1
507,288 - HMPREF1181_RS02065 0.48 +0.8
507,348 + HMPREF1181_RS02065 0.51 +0.4
507,348 + HMPREF1181_RS02065 0.51 +0.4
507,380 - HMPREF1181_RS02065 0.53 +0.6
507,384 - HMPREF1181_RS02065 0.54 -0.1
507,384 - HMPREF1181_RS02065 0.54 -1.9
507,413 + HMPREF1181_RS02065 0.56 -0.3
507,414 - HMPREF1181_RS02065 0.56 +1.0
507,426 + HMPREF1181_RS02065 0.56 -1.1
507,431 - HMPREF1181_RS02065 0.57 -0.0
507,438 + HMPREF1181_RS02065 0.57 +0.6
507,508 + HMPREF1181_RS02065 0.62 +0.9
507,509 - HMPREF1181_RS02065 0.62 -1.1
507,523 + HMPREF1181_RS02065 0.63 -0.3
507,548 + HMPREF1181_RS02065 0.64 -1.0
507,553 - HMPREF1181_RS02065 0.65 -1.3
507,558 + HMPREF1181_RS02065 0.65 -0.0
507,645 - HMPREF1181_RS02065 0.70 +0.2
507,645 - HMPREF1181_RS02065 0.70 -0.4
507,654 + HMPREF1181_RS02065 0.71 -0.7
507,655 - HMPREF1181_RS02065 0.71 +0.4
507,760 - HMPREF1181_RS02065 0.78 +0.4
507,762 + HMPREF1181_RS02065 0.78 +0.0
507,778 - HMPREF1181_RS02065 0.79 +0.8
507,803 + HMPREF1181_RS02065 0.81 +0.3
507,803 + HMPREF1181_RS02065 0.81 +0.6
507,809 - HMPREF1181_RS02065 0.81 +0.2
507,811 - HMPREF1181_RS02065 0.81 +0.2
507,856 - HMPREF1181_RS02065 0.84 -1.1
508,074 - -2.0
508,074 - +0.1
508,091 + +0.1
508,153 + +0.5
508,153 + +0.4
508,198 - -1.2
508,215 + -0.6
508,604 + HMPREF1181_RS02070 0.13 -0.3
508,840 - HMPREF1181_RS02070 0.22 +0.4
509,087 + HMPREF1181_RS02070 0.30 -0.4
509,087 + HMPREF1181_RS02070 0.30 +1.7

Or see this region's nucleotide sequence