Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF949 and GFF950 overlap by 1 nucleotides GFF950 and GFF951 overlap by 1 nucleotides
GFF949 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 683,723 to 684,769
GFF949
GFF950 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 684,769 to 685,641
GFF950
GFF951 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 685,641 to 687,509
GFF951
Position (kb) 684
685
686 Strain fitness (log2 ratio) -1
0
1 at 683.826 kb on + strand at 684.005 kb on + strand, within GFF949 at 684.046 kb on - strand, within GFF949 at 684.046 kb on - strand, within GFF949 at 684.049 kb on - strand, within GFF949 at 684.049 kb on - strand, within GFF949 at 684.111 kb on + strand, within GFF949 at 684.112 kb on - strand, within GFF949 at 684.246 kb on + strand, within GFF949 at 684.246 kb on + strand, within GFF949 at 684.247 kb on - strand, within GFF949 at 684.247 kb on - strand, within GFF949 at 684.249 kb on + strand, within GFF949 at 684.250 kb on - strand, within GFF949 at 684.250 kb on - strand, within GFF949 at 684.250 kb on - strand, within GFF949 at 684.253 kb on - strand, within GFF949 at 684.393 kb on + strand, within GFF949 at 684.420 kb on - strand, within GFF949 at 684.519 kb on + strand, within GFF949 at 684.639 kb on + strand, within GFF949 at 684.640 kb on - strand, within GFF949 at 684.640 kb on - strand, within GFF949 at 684.641 kb on + strand, within GFF949 at 684.642 kb on + strand, within GFF949 at 684.642 kb on + strand, within GFF949 at 684.806 kb on + strand at 684.806 kb on + strand at 684.806 kb on + strand at 684.806 kb on + strand at 684.819 kb on + strand at 684.875 kb on + strand, within GFF950 at 684.875 kb on + strand, within GFF950 at 684.876 kb on - strand, within GFF950 at 684.876 kb on - strand, within GFF950 at 685.011 kb on - strand, within GFF950 at 685.189 kb on + strand, within GFF950 at 685.215 kb on - strand, within GFF950 at 685.229 kb on + strand, within GFF950 at 685.499 kb on + strand, within GFF950 at 685.499 kb on + strand, within GFF950 at 685.499 kb on + strand, within GFF950 at 685.590 kb on - strand at 685.634 kb on + strand at 685.634 kb on + strand at 685.879 kb on + strand, within GFF951 at 685.879 kb on + strand, within GFF951 at 685.880 kb on - strand, within GFF951 at 685.949 kb on - strand, within GFF951 at 685.987 kb on + strand, within GFF951 at 685.987 kb on + strand, within GFF951 at 685.987 kb on + strand, within GFF951 at 685.988 kb on - strand, within GFF951 at 685.988 kb on - strand, within GFF951 at 686.173 kb on + strand, within GFF951 at 686.323 kb on + strand, within GFF951 at 686.368 kb on - strand, within GFF951
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 683,826 + -0.5 684,005 + GFF949 0.27 -0.8 684,046 - GFF949 0.31 -0.1 684,046 - GFF949 0.31 -0.3 684,049 - GFF949 0.31 -0.5 684,049 - GFF949 0.31 +0.5 684,111 + GFF949 0.37 +1.4 684,112 - GFF949 0.37 +0.7 684,246 + GFF949 0.50 -1.5 684,246 + GFF949 0.50 +1.1 684,247 - GFF949 0.50 +1.1 684,247 - GFF949 0.50 +1.1 684,249 + GFF949 0.50 -0.5 684,250 - GFF949 0.50 -1.3 684,250 - GFF949 0.50 +0.1 684,250 - GFF949 0.50 -0.6 684,253 - GFF949 0.51 -0.2 684,393 + GFF949 0.64 +0.3 684,420 - GFF949 0.67 +0.1 684,519 + GFF949 0.76 -0.8 684,639 + GFF949 0.87 +0.8 684,640 - GFF949 0.88 +0.4 684,640 - GFF949 0.88 +0.1 684,641 + GFF949 0.88 +0.3 684,642 + GFF949 0.88 -1.4 684,642 + GFF949 0.88 +0.1 684,806 + +0.1 684,806 + -0.7 684,806 + +0.6 684,806 + -0.1 684,819 + +0.4 684,875 + GFF950 0.12 +0.2 684,875 + GFF950 0.12 +0.2 684,876 - GFF950 0.12 +0.3 684,876 - GFF950 0.12 -0.6 685,011 - GFF950 0.28 +0.1 685,189 + GFF950 0.48 +0.5 685,215 - GFF950 0.51 -1.2 685,229 + GFF950 0.53 +0.3 685,499 + GFF950 0.84 -0.0 685,499 + GFF950 0.84 -0.4 685,499 + GFF950 0.84 +0.5 685,590 - +0.6 685,634 + +0.4 685,634 + -1.1 685,879 + GFF951 0.13 +0.7 685,879 + GFF951 0.13 -0.2 685,880 - GFF951 0.13 +0.1 685,949 - GFF951 0.16 +0.2 685,987 + GFF951 0.19 -0.7 685,987 + GFF951 0.19 -0.9 685,987 + GFF951 0.19 -0.3 685,988 - GFF951 0.19 -1.5 685,988 - GFF951 0.19 +0.8 686,173 + GFF951 0.28 +0.1 686,323 + GFF951 0.36 -0.1 686,368 - GFF951 0.39 -0.9
Or see this region's nucleotide sequence