Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF947 and GFF948 are separated by 55 nucleotides GFF948 and GFF949 are separated by 41 nucleotides
GFF947 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 681,215 to 682,423
GFF947
GFF948 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 682,479 to 683,681
GFF948
GFF949 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 683,723 to 684,769
GFF949
Position (kb) 682
683
684 Strain fitness (log2 ratio) -2
-1
0
1
2 at 681.501 kb on + strand, within GFF947 at 681.501 kb on + strand, within GFF947 at 681.501 kb on + strand, within GFF947 at 681.502 kb on - strand, within GFF947 at 681.567 kb on + strand, within GFF947 at 681.567 kb on + strand, within GFF947 at 681.567 kb on + strand, within GFF947 at 681.568 kb on - strand, within GFF947 at 681.582 kb on + strand, within GFF947 at 681.811 kb on + strand, within GFF947 at 681.879 kb on + strand, within GFF947 at 681.879 kb on + strand, within GFF947 at 681.880 kb on - strand, within GFF947 at 681.957 kb on + strand, within GFF947 at 681.957 kb on + strand, within GFF947 at 681.958 kb on - strand, within GFF947 at 681.958 kb on - strand, within GFF947 at 681.958 kb on - strand, within GFF947 at 681.958 kb on - strand, within GFF947 at 681.977 kb on + strand, within GFF947 at 681.978 kb on - strand, within GFF947 at 682.030 kb on + strand, within GFF947 at 682.030 kb on + strand, within GFF947 at 682.030 kb on + strand, within GFF947 at 682.164 kb on + strand, within GFF947 at 682.164 kb on + strand, within GFF947 at 682.164 kb on + strand, within GFF947 at 682.164 kb on + strand, within GFF947 at 682.238 kb on + strand, within GFF947 at 682.372 kb on + strand at 682.373 kb on - strand at 682.410 kb on + strand at 682.411 kb on - strand at 682.480 kb on + strand at 682.481 kb on - strand at 682.707 kb on + strand, within GFF948 at 682.707 kb on + strand, within GFF948 at 682.708 kb on - strand, within GFF948 at 682.708 kb on - strand, within GFF948 at 682.708 kb on - strand, within GFF948 at 682.708 kb on - strand, within GFF948 at 682.708 kb on - strand, within GFF948 at 682.711 kb on + strand, within GFF948 at 682.712 kb on - strand, within GFF948 at 682.763 kb on - strand, within GFF948 at 682.763 kb on - strand, within GFF948 at 682.768 kb on + strand, within GFF948 at 682.806 kb on + strand, within GFF948 at 682.806 kb on + strand, within GFF948 at 682.806 kb on + strand, within GFF948 at 682.806 kb on + strand, within GFF948 at 682.806 kb on + strand, within GFF948 at 682.828 kb on + strand, within GFF948 at 682.829 kb on - strand, within GFF948 at 682.829 kb on - strand, within GFF948 at 682.840 kb on + strand, within GFF948 at 682.841 kb on - strand, within GFF948 at 683.050 kb on + strand, within GFF948 at 683.050 kb on + strand, within GFF948 at 683.050 kb on + strand, within GFF948 at 683.050 kb on + strand, within GFF948 at 683.101 kb on + strand, within GFF948 at 683.231 kb on + strand, within GFF948 at 683.283 kb on - strand, within GFF948 at 683.426 kb on - strand, within GFF948 at 683.670 kb on + strand at 683.670 kb on + strand at 683.671 kb on - strand at 683.693 kb on + strand at 683.693 kb on + strand at 683.693 kb on + strand at 683.694 kb on - strand at 683.694 kb on - strand at 683.701 kb on - strand at 683.751 kb on + strand at 683.752 kb on - strand at 683.826 kb on + strand at 684.005 kb on + strand, within GFF949 at 684.046 kb on - strand, within GFF949 at 684.046 kb on - strand, within GFF949 at 684.049 kb on - strand, within GFF949 at 684.049 kb on - strand, within GFF949 at 684.111 kb on + strand, within GFF949 at 684.112 kb on - strand, within GFF949 at 684.246 kb on + strand, within GFF949 at 684.246 kb on + strand, within GFF949 at 684.247 kb on - strand, within GFF949 at 684.247 kb on - strand, within GFF949 at 684.249 kb on + strand, within GFF949 at 684.250 kb on - strand, within GFF949 at 684.250 kb on - strand, within GFF949 at 684.250 kb on - strand, within GFF949 at 684.253 kb on - strand, within GFF949 at 684.393 kb on + strand, within GFF949 at 684.420 kb on - strand, within GFF949 at 684.519 kb on + strand, within GFF949 at 684.639 kb on + strand, within GFF949 at 684.640 kb on - strand, within GFF949 at 684.640 kb on - strand, within GFF949 at 684.641 kb on + strand, within GFF949 at 684.642 kb on + strand, within GFF949 at 684.642 kb on + strand, within GFF949
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 681,501 + GFF947 0.24 -0.7 681,501 + GFF947 0.24 -0.1 681,501 + GFF947 0.24 -1.4 681,502 - GFF947 0.24 +0.5 681,567 + GFF947 0.29 -0.1 681,567 + GFF947 0.29 -0.3 681,567 + GFF947 0.29 +0.2 681,568 - GFF947 0.29 +0.9 681,582 + GFF947 0.30 +1.1 681,811 + GFF947 0.49 +1.1 681,879 + GFF947 0.55 +0.3 681,879 + GFF947 0.55 -0.4 681,880 - GFF947 0.55 -0.6 681,957 + GFF947 0.61 -0.2 681,957 + GFF947 0.61 +0.1 681,958 - GFF947 0.61 -0.0 681,958 - GFF947 0.61 +0.7 681,958 - GFF947 0.61 -1.0 681,958 - GFF947 0.61 -0.2 681,977 + GFF947 0.63 +0.1 681,978 - GFF947 0.63 +1.1 682,030 + GFF947 0.67 -0.1 682,030 + GFF947 0.67 -1.0 682,030 + GFF947 0.67 +0.6 682,164 + GFF947 0.78 +0.5 682,164 + GFF947 0.78 -0.5 682,164 + GFF947 0.78 -0.3 682,164 + GFF947 0.78 -0.4 682,238 + GFF947 0.85 +0.7 682,372 + -1.0 682,373 - +0.7 682,410 + +0.1 682,411 - -2.1 682,480 + +0.1 682,481 - +0.1 682,707 + GFF948 0.19 -0.0 682,707 + GFF948 0.19 -0.6 682,708 - GFF948 0.19 +0.3 682,708 - GFF948 0.19 +0.1 682,708 - GFF948 0.19 -0.2 682,708 - GFF948 0.19 -0.5 682,708 - GFF948 0.19 -0.6 682,711 + GFF948 0.19 +0.2 682,712 - GFF948 0.19 +1.9 682,763 - GFF948 0.24 -0.4 682,763 - GFF948 0.24 -0.5 682,768 + GFF948 0.24 -0.1 682,806 + GFF948 0.27 -0.3 682,806 + GFF948 0.27 -0.3 682,806 + GFF948 0.27 -0.5 682,806 + GFF948 0.27 -0.2 682,806 + GFF948 0.27 -0.6 682,828 + GFF948 0.29 -1.0 682,829 - GFF948 0.29 -1.4 682,829 - GFF948 0.29 -1.2 682,840 + GFF948 0.30 -0.8 682,841 - GFF948 0.30 +0.1 683,050 + GFF948 0.47 +0.7 683,050 + GFF948 0.47 +0.1 683,050 + GFF948 0.47 +0.4 683,050 + GFF948 0.47 -1.0 683,101 + GFF948 0.52 -0.3 683,231 + GFF948 0.63 -0.2 683,283 - GFF948 0.67 -0.7 683,426 - GFF948 0.79 +0.2 683,670 + -0.3 683,670 + +0.7 683,671 - -1.2 683,693 + -0.2 683,693 + -0.5 683,693 + +0.5 683,694 - -0.1 683,694 - -0.9 683,701 - +0.2 683,751 + +0.2 683,752 - +0.1 683,826 + -0.5 684,005 + GFF949 0.27 -0.8 684,046 - GFF949 0.31 -0.1 684,046 - GFF949 0.31 -0.3 684,049 - GFF949 0.31 -0.5 684,049 - GFF949 0.31 +0.5 684,111 + GFF949 0.37 +1.4 684,112 - GFF949 0.37 +0.7 684,246 + GFF949 0.50 -1.5 684,246 + GFF949 0.50 +1.1 684,247 - GFF949 0.50 +1.1 684,247 - GFF949 0.50 +1.1 684,249 + GFF949 0.50 -0.5 684,250 - GFF949 0.50 -1.3 684,250 - GFF949 0.50 +0.1 684,250 - GFF949 0.50 -0.6 684,253 - GFF949 0.51 -0.2 684,393 + GFF949 0.64 +0.3 684,420 - GFF949 0.67 +0.1 684,519 + GFF949 0.76 -0.8 684,639 + GFF949 0.87 +0.8 684,640 - GFF949 0.88 +0.4 684,640 - GFF949 0.88 +0.1 684,641 + GFF949 0.88 +0.3 684,642 + GFF949 0.88 -1.4 684,642 + GFF949 0.88 +0.1
Or see this region's nucleotide sequence