Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF916 and GFF917 are separated by 82 nucleotides GFF917 and GFF918 are separated by 1 nucleotides GFF918 and GFF919 are separated by 6 nucleotides
GFF916 - Beta-lactamase-like, at 647,607 to 648,527
GFF916
GFF917 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 648,610 to 650,613
GFF917
GFF918 - Enoyl-CoA hydratase (EC 4.2.1.17), at 650,615 to 651,415
GFF918
GFF919 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 651,422 to 652,645
GFF919
Position (kb) 648
649
650
651 Strain fitness (log2 ratio) -2
-1
0
1 at 647.617 kb on + strand at 647.618 kb on - strand at 647.734 kb on + strand, within GFF916 at 647.734 kb on + strand, within GFF916 at 647.879 kb on - strand, within GFF916 at 648.211 kb on + strand, within GFF916 at 648.211 kb on + strand, within GFF916 at 648.211 kb on + strand, within GFF916 at 648.212 kb on - strand, within GFF916 at 648.212 kb on - strand, within GFF916 at 648.286 kb on + strand, within GFF916 at 648.287 kb on - strand, within GFF916 at 648.338 kb on + strand, within GFF916 at 648.338 kb on + strand, within GFF916 at 648.415 kb on + strand, within GFF916 at 648.416 kb on - strand, within GFF916 at 648.416 kb on - strand, within GFF916 at 648.501 kb on - strand at 648.612 kb on - strand at 648.772 kb on + strand at 649.475 kb on + strand, within GFF917 at 649.478 kb on + strand, within GFF917 at 650.161 kb on + strand, within GFF917 at 650.435 kb on + strand at 651.011 kb on + strand, within GFF918 at 651.178 kb on + strand, within GFF918 at 651.427 kb on - strand at 651.427 kb on - strand at 651.555 kb on + strand, within GFF919
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 647,617 + +0.3 647,618 - +0.7 647,734 + GFF916 0.14 +0.1 647,734 + GFF916 0.14 +0.2 647,879 - GFF916 0.30 -0.2 648,211 + GFF916 0.66 -0.4 648,211 + GFF916 0.66 +1.1 648,211 + GFF916 0.66 -0.5 648,212 - GFF916 0.66 +0.0 648,212 - GFF916 0.66 +0.6 648,286 + GFF916 0.74 -0.3 648,287 - GFF916 0.74 +0.5 648,338 + GFF916 0.79 +0.0 648,338 + GFF916 0.79 +0.1 648,415 + GFF916 0.88 +0.2 648,416 - GFF916 0.88 -0.4 648,416 - GFF916 0.88 -0.5 648,501 - -1.3 648,612 - -0.0 648,772 + -0.2 649,475 + GFF917 0.43 -0.8 649,478 + GFF917 0.43 -0.6 650,161 + GFF917 0.77 -0.0 650,435 + -0.1 651,011 + GFF918 0.49 -1.9 651,178 + GFF918 0.70 +1.1 651,427 - +0.3 651,427 - -0.1 651,555 + GFF919 0.11 +0.5
Or see this region's nucleotide sequence