Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF770

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF769 and GFF770 are separated by 167 nucleotidesGFF770 and GFF771 are separated by 90 nucleotidesGFF771 and GFF772 are separated by 12 nucleotidesGFF772 and GFF773 are separated by 201 nucleotides GFF769 - Fmu (Sun) /eukaryotic nucleolar NOL1/Nop2p; tRNA and rRNA cytosine-C5-methylases, at 462,779 to 464,047 GFF769 GFF770 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 464,215 to 465,441 GFF770 GFF771 - LSU ribosomal protein L33p, at 465,532 to 465,702 GFF771 GFF772 - LSU ribosomal protein L28p, at 465,715 to 465,948 GFF772 GFF773 - Thioredoxin reductase (EC 1.8.1.9), at 466,150 to 467,097 GFF773 Position (kb) 464 465 466Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 463.520 kb on + strand, within GFF769at 463.520 kb on + strand, within GFF769at 463.521 kb on - strand, within GFF769at 463.521 kb on - strand, within GFF769at 463.521 kb on - strand, within GFF769at 463.521 kb on - strand, within GFF769at 463.521 kb on - strand, within GFF769at 463.820 kb on + strand, within GFF769at 463.820 kb on + strand, within GFF769at 463.821 kb on - strand, within GFF769at 464.070 kb on + strandat 464.070 kb on + strandat 464.070 kb on + strandat 464.071 kb on - strandat 464.071 kb on - strandat 464.071 kb on - strandat 464.071 kb on - strandat 464.071 kb on - strandat 464.078 kb on + strandat 464.078 kb on + strandat 464.079 kb on - strandat 464.079 kb on - strandat 464.079 kb on - strandat 464.129 kb on + strandat 464.130 kb on - strandat 464.130 kb on - strandat 464.205 kb on + strandat 464.205 kb on + strandat 464.206 kb on - strandat 464.206 kb on - strandat 464.206 kb on - strandat 464.362 kb on + strand, within GFF770at 464.362 kb on + strand, within GFF770at 464.362 kb on + strand, within GFF770at 464.362 kb on + strand, within GFF770at 464.362 kb on + strand, within GFF770at 464.362 kb on + strand, within GFF770at 464.363 kb on - strand, within GFF770at 464.363 kb on - strand, within GFF770at 464.363 kb on - strand, within GFF770at 464.363 kb on - strand, within GFF770at 464.557 kb on + strand, within GFF770at 464.557 kb on + strand, within GFF770at 464.557 kb on + strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.575 kb on + strand, within GFF770at 464.656 kb on + strand, within GFF770at 464.656 kb on + strand, within GFF770at 464.657 kb on - strand, within GFF770at 464.902 kb on + strand, within GFF770at 464.903 kb on - strand, within GFF770at 464.903 kb on - strand, within GFF770at 464.903 kb on - strand, within GFF770at 464.903 kb on - strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 465.022 kb on + strand, within GFF770at 465.022 kb on + strand, within GFF770at 465.023 kb on - strand, within GFF770at 465.082 kb on + strand, within GFF770at 465.082 kb on + strand, within GFF770at 465.100 kb on + strand, within GFF770at 465.533 kb on + strandat 465.533 kb on + strandat 465.534 kb on - strandat 465.554 kb on + strand, within GFF771at 465.555 kb on - strand, within GFF771at 465.555 kb on - strand, within GFF771at 465.638 kb on + strand, within GFF771at 465.638 kb on + strand, within GFF771at 465.638 kb on + strand, within GFF771at 465.639 kb on - strand, within GFF771at 465.639 kb on - strand, within GFF771at 465.716 kb on + strandat 465.717 kb on - strandat 465.717 kb on - strandat 465.717 kb on - strandat 465.717 kb on - strandat 465.717 kb on - strandat 465.717 kb on - strandat 466.103 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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463,520 + GFF769 0.58 -0.6
463,520 + GFF769 0.58 -0.5
463,521 - GFF769 0.58 -0.7
463,521 - GFF769 0.58 +0.1
463,521 - GFF769 0.58 +0.1
463,521 - GFF769 0.58 -0.1
463,521 - GFF769 0.58 -2.3
463,820 + GFF769 0.82 +0.1
463,820 + GFF769 0.82 +0.5
463,821 - GFF769 0.82 -0.9
464,070 + -0.4
464,070 + -0.2
464,070 + -0.6
464,071 - -0.2
464,071 - -0.8
464,071 - -0.2
464,071 - -0.4
464,071 - -0.3
464,078 + -0.1
464,078 + +1.1
464,079 - +0.5
464,079 - -0.5
464,079 - -0.4
464,129 + +0.2
464,130 - -0.6
464,130 - +0.1
464,205 + -0.8
464,205 + -0.9
464,206 - -0.5
464,206 - -0.3
464,206 - +0.3
464,362 + GFF770 0.12 -2.2
464,362 + GFF770 0.12 +0.1
464,362 + GFF770 0.12 -2.0
464,362 + GFF770 0.12 -2.6
464,362 + GFF770 0.12 -0.3
464,362 + GFF770 0.12 -0.5
464,363 - GFF770 0.12 -1.7
464,363 - GFF770 0.12 +0.1
464,363 - GFF770 0.12 -1.5
464,363 - GFF770 0.12 -2.6
464,557 + GFF770 0.28 -0.7
464,557 + GFF770 0.28 -2.5
464,557 + GFF770 0.28 -2.5
464,558 - GFF770 0.28 -1.4
464,558 - GFF770 0.28 -0.7
464,558 - GFF770 0.28 -0.7
464,558 - GFF770 0.28 -1.0
464,558 - GFF770 0.28 -1.5
464,558 - GFF770 0.28 -1.7
464,558 - GFF770 0.28 -2.4
464,558 - GFF770 0.28 -2.0
464,558 - GFF770 0.28 -3.6
464,575 + GFF770 0.29 -1.8
464,656 + GFF770 0.36 -3.7
464,656 + GFF770 0.36 -1.4
464,657 - GFF770 0.36 -1.1
464,902 + GFF770 0.56 -0.9
464,903 - GFF770 0.56 -1.7
464,903 - GFF770 0.56 -1.9
464,903 - GFF770 0.56 +0.1
464,903 - GFF770 0.56 -0.5
464,959 + GFF770 0.61 -2.9
464,959 + GFF770 0.61 -2.1
464,959 + GFF770 0.61 -2.2
464,959 + GFF770 0.61 -1.9
464,959 + GFF770 0.61 -0.5
464,959 + GFF770 0.61 -1.7
464,959 + GFF770 0.61 +0.1
464,959 + GFF770 0.61 -0.5
464,959 + GFF770 0.61 -0.2
464,959 + GFF770 0.61 -1.5
464,959 + GFF770 0.61 -0.9
464,960 - GFF770 0.61 -1.9
464,960 - GFF770 0.61 -1.9
464,960 - GFF770 0.61 -2.6
464,960 - GFF770 0.61 -2.6
464,960 - GFF770 0.61 +0.1
464,960 - GFF770 0.61 -0.9
464,960 - GFF770 0.61 -2.2
464,960 - GFF770 0.61 -1.8
464,960 - GFF770 0.61 -1.5
464,960 - GFF770 0.61 -1.4
464,960 - GFF770 0.61 +1.7
465,022 + GFF770 0.66 -0.2
465,022 + GFF770 0.66 -2.0
465,023 - GFF770 0.66 -1.5
465,082 + GFF770 0.71 -1.8
465,082 + GFF770 0.71 +0.1
465,100 + GFF770 0.72 -1.7
465,533 + -0.1
465,533 + +0.3
465,534 - -0.9
465,554 + GFF771 0.13 -0.2
465,555 - GFF771 0.13 +1.3
465,555 - GFF771 0.13 +1.1
465,638 + GFF771 0.62 -0.1
465,638 + GFF771 0.62 +0.6
465,638 + GFF771 0.62 +1.3
465,639 - GFF771 0.63 +1.5
465,639 - GFF771 0.63 +0.8
465,716 + +1.8
465,717 - +0.6
465,717 - +0.5
465,717 - +1.0
465,717 - +0.6
465,717 - +1.0
465,717 - +0.1
466,103 + -0.1

Or see this region's nucleotide sequence