Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF732 and GFF733 are separated by 128 nucleotides GFF733 and GFF734 overlap by 17 nucleotides GFF734 and GFF735 overlap by 4 nucleotides
GFF732 - Muconate cycloisomerase (EC 5.5.1.1), at 411,009 to 412,163
GFF732
GFF733 - Transcriptional regulators, LysR family, at 412,292 to 413,179
GFF733
GFF734 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 413,163 to 415,322
GFF734
GFF735 - Large extracellular alpha-helical protein, at 415,319 to 421,270
GFF735
Position (kb) 413
414
415
416 Strain fitness (log2 ratio) -1
0
1 at 412.164 kb on - strand at 412.223 kb on + strand at 412.223 kb on + strand at 412.224 kb on - strand at 412.224 kb on - strand at 412.224 kb on - strand at 412.224 kb on - strand at 413.725 kb on + strand, within GFF734 at 413.725 kb on + strand, within GFF734 at 413.725 kb on + strand, within GFF734 at 413.725 kb on + strand, within GFF734 at 414.014 kb on - strand, within GFF734 at 414.175 kb on + strand, within GFF734 at 414.190 kb on + strand, within GFF734 at 414.190 kb on + strand, within GFF734 at 414.190 kb on + strand, within GFF734 at 414.191 kb on - strand, within GFF734 at 414.191 kb on - strand, within GFF734 at 414.833 kb on - strand, within GFF734 at 414.833 kb on - strand, within GFF734 at 415.381 kb on - strand at 415.381 kb on - strand at 415.444 kb on - strand at 415.473 kb on + strand at 415.479 kb on + strand at 415.479 kb on + strand at 415.479 kb on + strand at 415.479 kb on + strand at 415.480 kb on - strand at 415.483 kb on - strand at 415.746 kb on + strand at 415.747 kb on - strand at 416.241 kb on + strand, within GFF735
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 412,164 - +0.1 412,223 + -0.9 412,223 + +1.1 412,224 - -0.3 412,224 - -0.8 412,224 - -0.8 412,224 - +1.3 413,725 + GFF734 0.26 -1.1 413,725 + GFF734 0.26 -0.3 413,725 + GFF734 0.26 -0.2 413,725 + GFF734 0.26 +0.0 414,014 - GFF734 0.39 -0.2 414,175 + GFF734 0.47 +1.1 414,190 + GFF734 0.48 -0.5 414,190 + GFF734 0.48 -1.5 414,190 + GFF734 0.48 -1.2 414,191 - GFF734 0.48 -0.2 414,191 - GFF734 0.48 -1.7 414,833 - GFF734 0.77 -0.0 414,833 - GFF734 0.77 -0.5 415,381 - +0.2 415,381 - +0.1 415,444 - +0.3 415,473 + -0.7 415,479 + -1.1 415,479 + +0.3 415,479 + +1.1 415,479 + -0.6 415,480 - +0.9 415,483 - -0.5 415,746 + -0.1 415,747 - -0.4 416,241 + GFF735 0.15 +0.2
Or see this region's nucleotide sequence