Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF632 and GFF633 overlap by 4 nucleotides GFF633 and GFF634 are separated by 177 nucleotides
GFF632 - putative transporter, at 308,698 to 309,876
GFF632
GFF633 - probable membrane protein YPO3302, at 309,873 to 310,355
GFF633
GFF634 - tRNA dihydrouridine synthase B (EC 1.-.-.-), at 310,533 to 311,567
GFF634
Position (kb) 309
310
311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 309.182 kb on + strand, within GFF632 at 309.183 kb on - strand, within GFF632 at 309.194 kb on + strand, within GFF632 at 309.195 kb on - strand, within GFF632 at 309.584 kb on + strand, within GFF632 at 309.584 kb on + strand, within GFF632 at 309.585 kb on - strand, within GFF632 at 309.585 kb on - strand, within GFF632 at 309.624 kb on - strand, within GFF632 at 309.624 kb on - strand, within GFF632 at 309.624 kb on - strand, within GFF632 at 309.624 kb on - strand, within GFF632 at 309.929 kb on - strand, within GFF633 at 309.929 kb on - strand, within GFF633 at 309.929 kb on - strand, within GFF633 at 309.929 kb on - strand, within GFF633 at 309.937 kb on - strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.956 kb on - strand, within GFF633 at 309.956 kb on - strand, within GFF633 at 310.336 kb on + strand at 310.336 kb on + strand at 310.336 kb on + strand at 310.336 kb on + strand at 310.336 kb on + strand at 310.337 kb on - strand at 310.337 kb on - strand at 310.337 kb on - strand at 310.427 kb on + strand at 310.427 kb on + strand at 310.427 kb on + strand at 310.427 kb on + strand at 310.427 kb on + strand at 310.427 kb on + strand at 310.428 kb on - strand at 310.428 kb on - strand at 310.455 kb on + strand at 310.456 kb on - strand at 310.456 kb on - strand at 310.638 kb on + strand, within GFF634 at 310.638 kb on + strand, within GFF634 at 310.638 kb on + strand, within GFF634 at 310.785 kb on + strand, within GFF634 at 310.785 kb on + strand, within GFF634 at 310.785 kb on + strand, within GFF634 at 310.786 kb on - strand, within GFF634 at 311.070 kb on + strand, within GFF634 at 311.070 kb on + strand, within GFF634 at 311.070 kb on + strand, within GFF634 at 311.070 kb on + strand, within GFF634 at 311.071 kb on - strand, within GFF634 at 311.071 kb on - strand, within GFF634 at 311.071 kb on - strand, within GFF634 at 311.071 kb on - strand, within GFF634 at 311.340 kb on + strand, within GFF634 at 311.340 kb on + strand, within GFF634 at 311.340 kb on + strand, within GFF634
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 309,182 + GFF632 0.41 +0.1 309,183 - GFF632 0.41 -0.0 309,194 + GFF632 0.42 -1.3 309,195 - GFF632 0.42 -0.2 309,584 + GFF632 0.75 +2.1 309,584 + GFF632 0.75 -0.1 309,585 - GFF632 0.75 -0.6 309,585 - GFF632 0.75 +0.9 309,624 - GFF632 0.79 -1.1 309,624 - GFF632 0.79 -0.4 309,624 - GFF632 0.79 -0.5 309,624 - GFF632 0.79 +1.1 309,929 - GFF633 0.12 +1.1 309,929 - GFF633 0.12 +0.7 309,929 - GFF633 0.12 +1.3 309,929 - GFF633 0.12 +0.7 309,937 - GFF633 0.13 +0.2 309,955 + GFF633 0.17 +0.2 309,955 + GFF633 0.17 +0.4 309,955 + GFF633 0.17 +0.2 309,955 + GFF633 0.17 +0.8 309,955 + GFF633 0.17 -1.4 309,955 + GFF633 0.17 -1.2 309,955 + GFF633 0.17 -0.1 309,955 + GFF633 0.17 +0.9 309,955 + GFF633 0.17 +0.2 309,956 - GFF633 0.17 +0.8 309,956 - GFF633 0.17 -0.5 310,336 + +0.9 310,336 + +0.1 310,336 + +0.1 310,336 + +0.4 310,336 + +0.4 310,337 - +0.5 310,337 - +1.1 310,337 - -0.2 310,427 + +0.3 310,427 + +0.4 310,427 + +0.1 310,427 + +0.1 310,427 + -0.2 310,427 + -0.3 310,428 - +0.7 310,428 - -0.5 310,455 + -1.2 310,456 - +0.0 310,456 - +0.1 310,638 + GFF634 0.10 +0.2 310,638 + GFF634 0.10 +0.2 310,638 + GFF634 0.10 -0.8 310,785 + GFF634 0.24 -0.5 310,785 + GFF634 0.24 +1.3 310,785 + GFF634 0.24 -1.1 310,786 - GFF634 0.24 -0.6 311,070 + GFF634 0.52 -0.1 311,070 + GFF634 0.52 -0.3 311,070 + GFF634 0.52 -0.7 311,070 + GFF634 0.52 -0.9 311,071 - GFF634 0.52 -0.7 311,071 - GFF634 0.52 -2.4 311,071 - GFF634 0.52 -1.2 311,071 - GFF634 0.52 +1.7 311,340 + GFF634 0.78 +0.1 311,340 + GFF634 0.78 -0.8 311,340 + GFF634 0.78 -0.5
Or see this region's nucleotide sequence