Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF573 and GFF574 are separated by 4 nucleotides GFF574 and GFF575 overlap by 4 nucleotides GFF575 and GFF576 are separated by 36 nucleotides
GFF573 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 244,749 to 245,741
GFF573
GFF574 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 245,746 to 246,363
GFF574
GFF575 - Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-), at 246,360 to 247,082
GFF575
GFF576 - TonB, C-terminal precursor, at 247,119 to 247,988
GFF576
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1 at 245.215 kb on + strand, within GFF573 at 245.215 kb on + strand, within GFF573 at 245.318 kb on - strand, within GFF573 at 245.318 kb on - strand, within GFF573 at 245.318 kb on - strand, within GFF573 at 245.371 kb on + strand, within GFF573 at 245.372 kb on - strand, within GFF573 at 245.954 kb on + strand, within GFF574 at 245.954 kb on + strand, within GFF574 at 245.954 kb on + strand, within GFF574 at 245.954 kb on + strand, within GFF574 at 245.955 kb on - strand, within GFF574 at 246.096 kb on - strand, within GFF574 at 246.096 kb on - strand, within GFF574 at 246.152 kb on + strand, within GFF574 at 246.152 kb on + strand, within GFF574 at 246.153 kb on - strand, within GFF574 at 246.251 kb on + strand, within GFF574 at 246.251 kb on + strand, within GFF574 at 246.251 kb on + strand, within GFF574 at 246.252 kb on - strand, within GFF574 at 246.252 kb on - strand, within GFF574 at 246.252 kb on - strand, within GFF574 at 246.252 kb on - strand, within GFF574 at 246.285 kb on - strand, within GFF574 at 246.419 kb on - strand at 246.419 kb on - strand at 246.419 kb on - strand at 246.419 kb on - strand at 246.521 kb on - strand, within GFF575 at 246.580 kb on + strand, within GFF575 at 246.580 kb on + strand, within GFF575 at 246.581 kb on - strand, within GFF575 at 246.581 kb on - strand, within GFF575 at 247.120 kb on + strand at 247.120 kb on + strand at 247.120 kb on + strand at 247.121 kb on - strand at 247.121 kb on - strand at 247.121 kb on - strand at 247.121 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 245,215 + GFF573 0.47 +0.5 245,215 + GFF573 0.47 -1.9 245,318 - GFF573 0.57 +0.1 245,318 - GFF573 0.57 -0.8 245,318 - GFF573 0.57 +1.5 245,371 + GFF573 0.63 -0.2 245,372 - GFF573 0.63 +0.6 245,954 + GFF574 0.34 +0.5 245,954 + GFF574 0.34 -0.2 245,954 + GFF574 0.34 -0.6 245,954 + GFF574 0.34 -0.9 245,955 - GFF574 0.34 -0.8 246,096 - GFF574 0.57 -0.5 246,096 - GFF574 0.57 +0.1 246,152 + GFF574 0.66 -1.2 246,152 + GFF574 0.66 +0.3 246,153 - GFF574 0.66 -1.2 246,251 + GFF574 0.82 +0.2 246,251 + GFF574 0.82 -0.3 246,251 + GFF574 0.82 +1.1 246,252 - GFF574 0.82 -0.5 246,252 - GFF574 0.82 -0.6 246,252 - GFF574 0.82 -0.2 246,252 - GFF574 0.82 +0.3 246,285 - GFF574 0.87 -1.0 246,419 - +0.6 246,419 - +0.8 246,419 - -0.2 246,419 - +0.2 246,521 - GFF575 0.22 +0.3 246,580 + GFF575 0.30 -0.3 246,580 + GFF575 0.30 -0.2 246,581 - GFF575 0.31 -0.3 246,581 - GFF575 0.31 -0.7 247,120 + +0.5 247,120 + -1.2 247,120 + +0.4 247,121 - +0.2 247,121 - -0.3 247,121 - +0.0 247,121 - -0.3
Or see this region's nucleotide sequence