Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5544

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
2,549,895	-		GFF5542	0.68	+0.3
2,549,895	-		GFF5542	0.68	-1.5
2,549,931	+		GFF5542	0.74	+0.2
2,549,932	-		GFF5542	0.74	-0.4
2,549,932	-		GFF5542	0.74	+0.8
2,549,950	+		GFF5542	0.77	-0.1
2,549,951	-		GFF5542	0.78	-0.6
2,550,032	+				+0.1
2,550,032	+				+0.7
2,550,074	+				+0.5
2,550,075	-				+0.4
2,550,075	-				-0.1
2,550,122	+				-1.1
2,550,123	-				+0.1
2,550,146	+				-0.5
2,550,146	+				-0.3
2,550,254	+		GFF5543	0.23	+0.3
2,550,255	-		GFF5543	0.23	-0.5
2,550,334	-		GFF5543	0.36	+1.1
2,550,396	+		GFF5543	0.45	+0.5
2,550,397	-		GFF5543	0.46	-0.2
2,550,397	-		GFF5543	0.46	-0.2
2,550,397	-		GFF5543	0.46	-0.6
2,550,459	-		GFF5543	0.55	-0.7
2,550,494	+		GFF5543	0.61	-0.7
2,550,495	-		GFF5543	0.61	+1.1
2,550,495	-		GFF5543	0.61	+0.0
2,550,617	+		GFF5543	0.80	-0.8
2,550,617	+		GFF5543	0.80	-0.3
2,550,617	+		GFF5543	0.80	+0.2
2,550,617	+		GFF5543	0.80	-0.5
2,550,618	-		GFF5543	0.80	-0.0
2,550,618	-		GFF5543	0.80	+0.8
2,550,618	-		GFF5543	0.80	+0.8
2,550,618	-		GFF5543	0.80	-0.4
2,550,618	-		GFF5543	0.80	-2.9
2,550,618	-		GFF5543	0.80	-0.9
2,550,740	+				+0.5
2,550,741	-				-0.3
2,550,827	+				-0.3
2,550,830	+				-0.1
2,550,830	+				+1.1
2,550,830	+				+0.5
2,550,887	+				+0.7
2,550,888	-				+1.3
2,550,938	+		GFF5544	0.15	-0.4
2,550,939	-		GFF5544	0.15	+0.1
2,550,953	+		GFF5544	0.17	+0.2
2,550,953	+		GFF5544	0.17	-0.4
2,550,953	+		GFF5544	0.17	+1.9
2,550,953	+		GFF5544	0.17	-0.1
2,550,953	+		GFF5544	0.17	+0.1
2,550,954	-		GFF5544	0.17	+0.4
2,550,956	+		GFF5544	0.18	-0.5
2,550,956	+		GFF5544	0.18	+0.2
2,550,956	+		GFF5544	0.18	-0.4
2,550,957	-		GFF5544	0.18	+1.1
2,551,095	+		GFF5544	0.43	-0.5
2,551,095	+		GFF5544	0.43	+0.1
2,551,095	+		GFF5544	0.43	+0.9
2,551,096	-		GFF5544	0.43	+1.1
2,551,096	-		GFF5544	0.43	+0.1
2,551,096	-		GFF5544	0.43	-0.5
2,551,113	-		GFF5544	0.46	-0.3
2,551,119	+		GFF5544	0.47	-1.0
2,551,120	-		GFF5544	0.47	+0.3
2,551,307	+		GFF5544	0.81	-0.2
2,551,308	-		GFF5544	0.81	+0.6
2,551,308	-		GFF5544	0.81	+0.7
2,551,308	-		GFF5544	0.81	-0.9
2,551,308	-		GFF5544	0.81	-1.2
2,551,308	-		GFF5544	0.81	-0.7
2,551,392	-				-0.4
2,551,392	-				-0.2
2,551,392	-				+0.3
2,551,392	-				-0.7
2,551,392	-				-0.3
2,551,509	-				-0.3
2,551,521	+				-0.4
2,551,618	+				+0.1
2,551,618	+				-0.1
2,551,619	-				-0.0
2,551,619	-				-1.2
2,551,619	-				-0.3
2,551,622	-				+1.9
2,551,720	+				-1.0
2,551,720	+				-0.4
2,551,721	-				-0.3
2,551,781	+				+0.1
2,551,781	+				+1.5
2,551,781	+				+1.1
2,551,782	-				+1.4
2,551,887	+				+0.4
2,551,930	+				-0.9
2,551,930	+				-1.1
2,551,931	-				-0.1
2,552,169	-		GFF5545	0.42	-0.4
2,552,230	-		GFF5545	0.51	+0.1
2,552,230	-		GFF5545	0.51	+0.1
2,552,296	+		GFF5545	0.61	+0.0
2,552,296	+		GFF5545	0.61	-0.0
2,552,297	-		GFF5545	0.61	-0.2
2,552,297	-		GFF5545	0.61	-0.1
2,552,311	+		GFF5545	0.63	+0.0
2,552,312	-		GFF5545	0.63	+0.3
2,552,312	-		GFF5545	0.63	+0.4
2,552,312	-		GFF5545	0.63	+0.2
2,552,341	+		GFF5545	0.67	+0.1
2,552,341	+		GFF5545	0.67	-1.5
2,552,342	-		GFF5545	0.67	-0.4
2,552,367	-		GFF5545	0.71	+0.9
2,552,383	+		GFF5545	0.73	+0.5
2,552,383	+		GFF5545	0.73	+0.7
2,552,383	+		GFF5545	0.73	-1.5
2,552,383	+		GFF5545	0.73	-0.5
2,552,383	+		GFF5545	0.73	-1.2
2,552,384	-		GFF5545	0.73	+0.3