Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF509 and GFF510 are separated by 12 nucleotides GFF510 and GFF511 are separated by 142 nucleotides
GFF509 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 177,058 to 178,134
GFF509
GFF510 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 178,147 to 179,022
GFF510
GFF511 - expressed protein, at 179,165 to 180,586
GFF511
Position (kb) 178
179
180 Strain fitness (log2 ratio) -1
0
1 at 177.425 kb on + strand, within GFF509 at 177.621 kb on - strand, within GFF509 at 177.765 kb on - strand, within GFF509 at 177.765 kb on - strand, within GFF509 at 178.062 kb on - strand at 178.110 kb on - strand at 178.221 kb on - strand at 178.221 kb on - strand at 178.221 kb on - strand at 178.221 kb on - strand at 178.253 kb on + strand, within GFF510 at 178.253 kb on + strand, within GFF510 at 178.253 kb on + strand, within GFF510 at 178.254 kb on - strand, within GFF510 at 178.481 kb on + strand, within GFF510 at 178.482 kb on - strand, within GFF510 at 178.484 kb on + strand, within GFF510 at 178.539 kb on - strand, within GFF510 at 178.678 kb on + strand, within GFF510 at 178.678 kb on + strand, within GFF510 at 178.679 kb on - strand, within GFF510 at 178.715 kb on + strand, within GFF510 at 178.940 kb on + strand at 178.940 kb on + strand at 178.941 kb on - strand at 178.973 kb on + strand at 178.974 kb on - strand at 179.036 kb on + strand at 179.036 kb on + strand at 179.037 kb on - strand at 179.102 kb on + strand at 179.103 kb on - strand at 179.105 kb on - strand at 179.219 kb on + strand at 179.220 kb on - strand at 179.946 kb on + strand, within GFF511 at 179.947 kb on - strand, within GFF511 at 179.947 kb on - strand, within GFF511
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 177,425 + GFF509 0.34 +0.8 177,621 - GFF509 0.52 -0.1 177,765 - GFF509 0.66 +0.8 177,765 - GFF509 0.66 +0.4 178,062 - +1.0 178,110 - +0.2 178,221 - +0.8 178,221 - -0.9 178,221 - +0.4 178,221 - +0.6 178,253 + GFF510 0.12 +0.6 178,253 + GFF510 0.12 +1.1 178,253 + GFF510 0.12 +0.3 178,254 - GFF510 0.12 +0.2 178,481 + GFF510 0.38 +1.3 178,482 - GFF510 0.38 +0.2 178,484 + GFF510 0.38 +1.1 178,539 - GFF510 0.45 +1.3 178,678 + GFF510 0.61 +0.9 178,678 + GFF510 0.61 -0.4 178,679 - GFF510 0.61 +0.4 178,715 + GFF510 0.65 +0.1 178,940 + +0.6 178,940 + +0.5 178,941 - -0.4 178,973 + +0.8 178,974 - +0.8 179,036 + +0.0 179,036 + +1.1 179,037 - -0.6 179,102 + +0.4 179,103 - -0.2 179,105 - +0.3 179,219 + -0.0 179,220 - -0.5 179,946 + GFF511 0.55 +0.5 179,947 - GFF511 0.55 +0.7 179,947 - GFF511 0.55 -0.2
Or see this region's nucleotide sequence