Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4599

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,542,920	+		GFF4595	0.88	+0.9
1,543,295	+		GFF4596	0.54	-0.4
1,543,295	+		GFF4596	0.54	+0.0
1,543,295	+		GFF4596	0.54	-0.2
1,543,296	-		GFF4596	0.54	+0.5
1,543,296	-		GFF4596	0.54	-0.1
1,543,296	-		GFF4596	0.54	-0.2
1,543,346	+		GFF4596	0.71	-0.0
1,543,346	+		GFF4596	0.71	+0.3
1,543,421	+				+0.7
1,543,422	-				+0.2
1,543,569	+				+0.6
1,543,569	+				-0.2
1,543,569	+				-0.8
1,543,569	+				+1.0
1,543,569	+				+0.4
1,543,570	-				+0.2
1,543,570	-				-0.8
1,543,570	-				+0.0
1,543,570	-				+0.0
1,543,570	-				-0.1
1,543,570	-				-1.1
1,543,570	-				-0.6
1,543,570	-				-0.3
1,543,570	-				+0.5
1,543,626	+		GFF4598	0.17	-0.7
1,543,626	+		GFF4598	0.17	-0.3
1,543,626	+		GFF4598	0.17	-1.1
1,543,627	-		GFF4598	0.18	+1.6
1,543,647	+		GFF4598	0.23	-2.0
1,543,647	+		GFF4598	0.23	-0.2
1,543,648	-		GFF4598	0.24	+0.8
1,543,648	-		GFF4598	0.24	+0.8
1,543,764	+		GFF4598	0.56	-0.9
1,543,795	-		GFF4598	0.64	+1.6
1,543,967	+				+0.1
1,543,967	+				+1.2
1,543,967	+				-0.1
1,543,968	-				+0.5
1,543,986	-				-0.1
1,544,514	-		GFF4599	0.47	-0.0
1,544,804	+		GFF4599	0.69	+0.2
1,544,804	+		GFF4599	0.69	+0.2
1,544,888	+		GFF4599	0.76	+0.2
1,544,888	+		GFF4599	0.76	+0.9
1,544,888	+		GFF4599	0.76	-0.0
1,544,888	+		GFF4599	0.76	+0.1
1,545,146	+				+0.0
1,545,147	-				-0.4
1,545,621	+		GFF4600	0.50	+5.5
1,545,621	+		GFF4600	0.50	+4.9
1,545,621	+		GFF4600	0.50	+4.5
1,545,621	+		GFF4600	0.50	+4.7
1,545,621	+		GFF4600	0.50	+5.2
1,545,622	-		GFF4600	0.50	+4.9
1,545,622	-		GFF4600	0.50	+4.8
1,545,745	-		GFF4600	0.65	+5.0
1,545,807	+		GFF4600	0.72	+4.6
1,545,807	+		GFF4600	0.72	+4.9
1,545,808	-		GFF4600	0.72	+4.9
1,545,960	+				+4.9