Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4311

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,238,022	+				-1.8
1,238,022	+				-0.4
1,238,022	+				-0.6
1,238,023	-				+0.4
1,238,575	+				+0.7
1,238,624	+				+1.5
1,238,668	+				+1.8
1,238,668	+				+2.7
1,238,669	-				+4.6
1,238,690	+				+1.4
1,238,690	+				+1.6
1,238,691	-				+4.4
1,238,691	-				+6.0
1,239,127	+		GFF4311	0.42	+5.7
1,239,127	+		GFF4311	0.42	+5.4
1,239,128	-		GFF4311	0.42	+5.8
1,239,128	-		GFF4311	0.42	+6.4
1,239,128	-		GFF4311	0.42	+4.5
1,239,178	+		GFF4311	0.45	+5.7
1,239,178	+		GFF4311	0.45	+5.0
1,239,179	-		GFF4311	0.45	+5.7
1,239,253	+		GFF4311	0.51	+4.1
1,239,253	+		GFF4311	0.51	+5.5
1,239,253	+		GFF4311	0.51	+5.5
1,239,253	+		GFF4311	0.51	+4.1
1,239,254	-		GFF4311	0.51	+6.1
1,239,254	-		GFF4311	0.51	+6.2
1,239,700	+		GFF4311	0.84	+5.9
1,239,701	-		GFF4311	0.84	+5.2
1,239,701	-		GFF4311	0.84	+5.4
1,239,715	+		GFF4311	0.85	+5.7
1,239,715	+		GFF4311	0.85	+4.9
1,239,715	+		GFF4311	0.85	+5.4
1,239,779	-		GFF4311	0.89	+5.2
1,239,805	+				+6.0
1,239,806	-				+6.0
1,239,806	-				+6.2
1,239,806	-				+5.6
1,239,880	+				+6.4
1,239,997	+				-0.8
1,239,997	+				+0.1
1,239,997	+				+0.2
1,239,997	+				-0.4
1,239,998	-				-0.6
1,240,045	+				-0.3
1,240,045	+				+0.8
1,240,085	+				-0.3
1,240,085	+				+0.7
1,240,085	+				+0.4
1,240,085	+				+0.5
1,240,085	+				-0.2
1,240,085	+				-0.2
1,240,085	+				-0.5
1,240,086	-				-0.6
1,240,086	-				-0.3
1,240,086	-				+0.1
1,240,086	-				+0.2
1,240,086	-				+0.2
1,240,086	-				+0.7
1,240,086	-				+0.3
1,240,086	-				+1.2
1,240,086	-				-0.4
1,240,229	+		GFF4312	0.35	-0.1
1,240,229	+		GFF4312	0.35	-0.4
1,240,229	+		GFF4312	0.35	+0.2
1,240,230	-		GFF4312	0.35	-0.8
1,240,230	-		GFF4312	0.35	-0.1
1,240,235	+		GFF4312	0.36	-0.2
1,240,235	+		GFF4312	0.36	+0.0
1,240,520	+				+0.5
1,240,520	+				-1.2
1,240,520	+				+0.0
1,240,520	+				+0.3
1,240,520	+				-1.8
1,240,521	-				+0.2
1,240,521	-				-0.4
1,240,521	-				+1.4