Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4307

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4305 and GFF4306 overlap by 4 nucleotidesGFF4306 and GFF4307 are separated by 5 nucleotidesGFF4307 and GFF4308 overlap by 4 nucleotides GFF4305 - Alkanesulfonate utilization operon LysR-family regulator CbI, at 1,233,023 to 1,233,967 GFF4305 GFF4306 - Sirohydrochlorin cobaltochelatase (EC 4.99.1.3), at 1,233,964 to 1,234,329 GFF4306 GFF4307 - FIG000906: Predicted Permease, at 1,234,335 to 1,235,453 GFF4307 GFF4308 - FIG000988: Predicted permease, at 1,235,450 to 1,236,571 GFF4308 Position (kb) 1234 1235 1236Strain fitness (log2 ratio) -1 0 1at 1234.212 kb on - strand, within GFF4306

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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1,234,212 - GFF4306 0.68 -0.4

Or see this region's nucleotide sequence