Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4303

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,230,263	+		GFF4302	0.48	+0.0
1,230,263	+		GFF4302	0.48	+1.1
1,230,264	-		GFF4302	0.48	+0.1
1,230,264	-		GFF4302	0.48	-0.4
1,230,476	+		GFF4302	0.78	-0.7
1,231,200	+		GFF4303	0.24	-1.7
1,231,200	+		GFF4303	0.24	-0.1
1,231,200	+		GFF4303	0.24	-0.7
1,231,200	+		GFF4303	0.24	-1.0
1,231,200	+		GFF4303	0.24	+0.6
1,231,201	-		GFF4303	0.24	-0.4
1,231,201	-		GFF4303	0.24	+0.3
1,231,201	-		GFF4303	0.24	-0.2
1,231,212	+		GFF4303	0.26	+0.9
1,231,212	+		GFF4303	0.26	-0.1
1,231,213	-		GFF4303	0.26	-0.1
1,231,299	+		GFF4303	0.38	+0.9
1,231,485	+		GFF4303	0.64	+0.7
1,231,486	-		GFF4303	0.64	-0.6
1,231,632	+		GFF4303	0.85	-1.2
1,231,632	+		GFF4303	0.85	-0.2
1,231,633	-		GFF4303	0.85	-0.2
1,231,633	-		GFF4303	0.85	+0.2
1,231,633	-		GFF4303	0.85	-0.6
1,231,717	-				-0.3
1,231,934	+				-0.8
1,231,934	+				+0.5
1,231,934	+				+0.6
1,231,935	-				+0.4
1,231,935	-				+0.3
1,231,935	-				+0.3
1,232,054	+		GFF4304	0.18	-0.9
1,232,054	+		GFF4304	0.18	-0.7
1,232,055	-		GFF4304	0.18	+0.6
1,232,055	-		GFF4304	0.18	+0.3
1,232,055	-		GFF4304	0.18	-0.2
1,232,129	+		GFF4304	0.25	-0.4
1,232,129	+		GFF4304	0.25	+0.8
1,232,130	-		GFF4304	0.25	-0.5
1,232,130	-		GFF4304	0.25	+0.8
1,232,150	+		GFF4304	0.26	+0.3
1,232,151	-		GFF4304	0.26	-0.3
1,232,171	+		GFF4304	0.28	+0.3
1,232,171	+		GFF4304	0.28	-0.3
1,232,171	+		GFF4304	0.28	-0.8
1,232,172	-		GFF4304	0.28	-0.7
1,232,172	-		GFF4304	0.28	+0.1
1,232,172	-		GFF4304	0.28	-1.1
1,232,297	+		GFF4304	0.39	-3.2
1,232,297	+		GFF4304	0.39	+0.2
1,232,297	+		GFF4304	0.39	-0.1
1,232,297	+		GFF4304	0.39	+1.2
1,232,297	+		GFF4304	0.39	-0.0
1,232,298	-		GFF4304	0.39	+0.6
1,232,298	-		GFF4304	0.39	-1.2
1,232,298	-		GFF4304	0.39	+0.5
1,232,396	+		GFF4304	0.47	-0.2
1,232,397	-		GFF4304	0.47	+0.6
1,232,627	+		GFF4304	0.67	-1.1
1,232,627	+		GFF4304	0.67	+0.3
1,232,627	+		GFF4304	0.67	+0.2
1,232,627	+		GFF4304	0.67	-0.2
1,232,628	-		GFF4304	0.67	-1.8
1,232,628	-		GFF4304	0.67	-0.3
1,232,628	-		GFF4304	0.67	+0.0
1,232,628	-		GFF4304	0.67	+0.7
1,232,628	-		GFF4304	0.67	-1.2
1,232,628	-		GFF4304	0.67	-0.2
1,232,628	-		GFF4304	0.67	+0.0
1,232,628	-		GFF4304	0.67	+0.2
1,232,628	-		GFF4304	0.67	-0.3
1,232,628	-		GFF4304	0.67	+1.6
1,232,636	+		GFF4304	0.68	+0.7