Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4219 and GFF4220 overlap by 4 nucleotides GFF4220 and GFF4221 are separated by 4 nucleotides
GFF4219 - Phosphoglucosamine mutase (EC 5.4.2.10), at 1,132,346 to 1,133,689
GFF4219
GFF4220 - Histone acetyltransferase HPA2 and related acetyltransferases, at 1,133,686 to 1,134,177
GFF4220
GFF4221 - alternate gene name: yzbB, at 1,134,182 to 1,135,384
GFF4221
Position (kb) 1133
1134
1135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1133.722 kb on + strand at 1133.723 kb on - strand at 1133.723 kb on - strand at 1133.770 kb on + strand, within GFF4220 at 1133.770 kb on + strand, within GFF4220 at 1133.770 kb on + strand, within GFF4220 at 1133.770 kb on + strand, within GFF4220 at 1133.770 kb on + strand, within GFF4220 at 1133.771 kb on - strand, within GFF4220 at 1133.771 kb on - strand, within GFF4220 at 1133.860 kb on + strand, within GFF4220 at 1133.860 kb on + strand, within GFF4220 at 1133.860 kb on + strand, within GFF4220 at 1133.925 kb on + strand, within GFF4220 at 1133.925 kb on + strand, within GFF4220 at 1133.925 kb on + strand, within GFF4220 at 1133.925 kb on + strand, within GFF4220 at 1133.925 kb on + strand, within GFF4220 at 1133.926 kb on - strand, within GFF4220 at 1133.926 kb on - strand, within GFF4220 at 1133.926 kb on - strand, within GFF4220 at 1134.101 kb on - strand, within GFF4220 at 1134.186 kb on + strand at 1134.444 kb on + strand, within GFF4221 at 1134.445 kb on - strand, within GFF4221 at 1134.687 kb on + strand, within GFF4221 at 1134.760 kb on - strand, within GFF4221 at 1134.760 kb on - strand, within GFF4221 at 1134.807 kb on + strand, within GFF4221 at 1134.808 kb on - strand, within GFF4221 at 1135.011 kb on + strand, within GFF4221 at 1135.012 kb on - strand, within GFF4221 at 1135.012 kb on - strand, within GFF4221 at 1135.012 kb on - strand, within GFF4221 at 1135.035 kb on + strand, within GFF4221 at 1135.035 kb on + strand, within GFF4221 at 1135.035 kb on + strand, within GFF4221 at 1135.035 kb on + strand, within GFF4221 at 1135.035 kb on + strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.161 kb on + strand, within GFF4221 at 1135.162 kb on - strand, within GFF4221 at 1135.162 kb on - strand, within GFF4221 at 1135.162 kb on - strand, within GFF4221
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 1,133,722 + +0.6 1,133,723 - +0.6 1,133,723 - -0.2 1,133,770 + GFF4220 0.17 -0.5 1,133,770 + GFF4220 0.17 -0.4 1,133,770 + GFF4220 0.17 +0.3 1,133,770 + GFF4220 0.17 -0.4 1,133,770 + GFF4220 0.17 +0.4 1,133,771 - GFF4220 0.17 +0.1 1,133,771 - GFF4220 0.17 +0.2 1,133,860 + GFF4220 0.35 -0.4 1,133,860 + GFF4220 0.35 -0.6 1,133,860 + GFF4220 0.35 +0.3 1,133,925 + GFF4220 0.49 -0.8 1,133,925 + GFF4220 0.49 -1.2 1,133,925 + GFF4220 0.49 -0.8 1,133,925 + GFF4220 0.49 -0.2 1,133,925 + GFF4220 0.49 +0.2 1,133,926 - GFF4220 0.49 -0.6 1,133,926 - GFF4220 0.49 +0.2 1,133,926 - GFF4220 0.49 +0.1 1,134,101 - GFF4220 0.84 +0.6 1,134,186 + -0.0 1,134,444 + GFF4221 0.22 +0.0 1,134,445 - GFF4221 0.22 +0.6 1,134,687 + GFF4221 0.42 +0.6 1,134,760 - GFF4221 0.48 +0.2 1,134,760 - GFF4221 0.48 +0.8 1,134,807 + GFF4221 0.52 -0.7 1,134,808 - GFF4221 0.52 -0.3 1,135,011 + GFF4221 0.69 -1.0 1,135,012 - GFF4221 0.69 -0.5 1,135,012 - GFF4221 0.69 +0.7 1,135,012 - GFF4221 0.69 +0.5 1,135,035 + GFF4221 0.71 -0.6 1,135,035 + GFF4221 0.71 -0.2 1,135,035 + GFF4221 0.71 +0.2 1,135,035 + GFF4221 0.71 +2.0 1,135,035 + GFF4221 0.71 -0.4 1,135,036 - GFF4221 0.71 +1.8 1,135,036 - GFF4221 0.71 +1.4 1,135,036 - GFF4221 0.71 -0.1 1,135,036 - GFF4221 0.71 +0.7 1,135,036 - GFF4221 0.71 +0.1 1,135,036 - GFF4221 0.71 -0.3 1,135,036 - GFF4221 0.71 +0.6 1,135,036 - GFF4221 0.71 -1.8 1,135,036 - GFF4221 0.71 -0.3 1,135,161 + GFF4221 0.81 -2.2 1,135,162 - GFF4221 0.81 +0.4 1,135,162 - GFF4221 0.81 -3.1 1,135,162 - GFF4221 0.81 -1.1
Or see this region's nucleotide sequence