Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4044 and GFF5791 are separated by 111 nucleotides GFF5791 and GFF5792 are separated by 77 nucleotides GFF5792 and GFF4045 are separated by 62 nucleotides GFF4045 and GFF4046 are separated by 477 nucleotides
GFF4044 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 963,194 to 965,626
GFF4044
GFF5791 - tRNA-Gly-GCC, at 965,738 to 965,810
GFF5791
GFF5792 - tRNA-Cys-GCA, at 965,888 to 965,958
GFF5792
GFF4045 - hypothetical protein, at 966,021 to 966,692
GFF4045
GFF4046 - hypothetical protein, at 967,170 to 967,757
GFF4046
Position (kb) 966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 965.373 kb on - strand, within GFF4044 at 965.708 kb on + strand at 966.277 kb on + strand, within GFF4045 at 966.277 kb on + strand, within GFF4045 at 966.277 kb on + strand, within GFF4045 at 966.277 kb on + strand, within GFF4045 at 966.278 kb on - strand, within GFF4045 at 966.278 kb on - strand, within GFF4045 at 966.278 kb on - strand, within GFF4045 at 966.382 kb on + strand, within GFF4045 at 966.382 kb on + strand, within GFF4045 at 966.382 kb on + strand, within GFF4045 at 966.382 kb on + strand, within GFF4045 at 966.383 kb on - strand, within GFF4045 at 966.383 kb on - strand, within GFF4045 at 966.383 kb on - strand, within GFF4045 at 966.383 kb on - strand, within GFF4045 at 966.520 kb on + strand, within GFF4045 at 966.520 kb on + strand, within GFF4045 at 966.520 kb on + strand, within GFF4045 at 966.568 kb on + strand, within GFF4045 at 966.732 kb on - strand at 966.763 kb on - strand at 966.763 kb on - strand at 966.779 kb on - strand at 967.023 kb on + strand at 967.023 kb on + strand at 967.023 kb on + strand at 967.023 kb on + strand at 967.064 kb on + strand at 967.064 kb on + strand at 967.064 kb on - strand at 967.065 kb on - strand at 967.065 kb on - strand at 967.065 kb on - strand at 967.065 kb on - strand at 967.106 kb on + strand at 967.106 kb on + strand at 967.106 kb on + strand at 967.106 kb on + strand at 967.107 kb on - strand at 967.107 kb on - strand at 967.148 kb on + strand at 967.148 kb on + strand at 967.148 kb on + strand at 967.148 kb on + strand at 967.148 kb on + strand at 967.148 kb on + strand at 967.148 kb on + strand at 967.148 kb on + strand at 967.149 kb on - strand at 967.149 kb on - strand at 967.149 kb on - strand at 967.149 kb on - strand at 967.149 kb on - strand at 967.149 kb on - strand at 967.149 kb on - strand at 967.209 kb on + strand at 967.209 kb on + strand at 967.209 kb on + strand at 967.209 kb on + strand at 967.210 kb on - strand at 967.210 kb on - strand at 967.210 kb on - strand at 967.210 kb on - strand at 967.389 kb on + strand, within GFF4046 at 967.390 kb on - strand, within GFF4046 at 967.390 kb on - strand, within GFF4046 at 967.665 kb on + strand, within GFF4046 at 967.665 kb on + strand, within GFF4046 at 967.666 kb on - strand, within GFF4046 at 967.666 kb on - strand, within GFF4046 at 967.666 kb on - strand, within GFF4046
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 965,373 - GFF4044 0.90 +1.7 965,708 + +1.3 966,277 + GFF4045 0.38 -0.9 966,277 + GFF4045 0.38 +0.4 966,277 + GFF4045 0.38 +0.4 966,277 + GFF4045 0.38 -1.2 966,278 - GFF4045 0.38 +0.1 966,278 - GFF4045 0.38 -1.1 966,278 - GFF4045 0.38 -2.0 966,382 + GFF4045 0.54 -0.4 966,382 + GFF4045 0.54 -1.9 966,382 + GFF4045 0.54 -0.9 966,382 + GFF4045 0.54 -0.2 966,383 - GFF4045 0.54 -1.7 966,383 - GFF4045 0.54 +1.0 966,383 - GFF4045 0.54 +0.1 966,383 - GFF4045 0.54 -1.0 966,520 + GFF4045 0.74 +0.4 966,520 + GFF4045 0.74 -0.7 966,520 + GFF4045 0.74 +0.1 966,568 + GFF4045 0.81 +1.1 966,732 - +1.1 966,763 - +0.4 966,763 - +0.1 966,779 - +0.1 967,023 + +0.1 967,023 + +0.0 967,023 + -0.2 967,023 + +0.0 967,064 + +0.1 967,064 + -0.6 967,064 - +0.0 967,065 - -0.0 967,065 - +0.2 967,065 - -0.2 967,065 - +0.4 967,106 + -2.3 967,106 + -0.0 967,106 + -1.9 967,106 + -0.2 967,107 - +0.1 967,107 - +1.2 967,148 + -0.2 967,148 + -0.6 967,148 + -1.5 967,148 + -0.1 967,148 + +2.1 967,148 + +0.5 967,148 + -0.0 967,148 + -0.6 967,149 - +0.0 967,149 - +0.0 967,149 - +0.7 967,149 - +0.1 967,149 - -3.6 967,149 - +0.2 967,149 - +0.3 967,209 + +0.1 967,209 + +0.1 967,209 + +0.5 967,209 + -1.2 967,210 - -0.4 967,210 - +0.6 967,210 - +1.5 967,210 - +0.6 967,389 + GFF4046 0.37 +1.1 967,390 - GFF4046 0.37 +0.3 967,390 - GFF4046 0.37 +0.0 967,665 + GFF4046 0.84 -0.1 967,665 + GFF4046 0.84 +1.1 967,666 - GFF4046 0.84 -1.9 967,666 - GFF4046 0.84 +0.7 967,666 - GFF4046 0.84 -0.4
Or see this region's nucleotide sequence