Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4020 and GFF4021 are separated by 88 nucleotides GFF4021 and GFF4022 are separated by 54 nucleotides GFF4022 and GFF4023 are separated by 14 nucleotides
GFF4020 - Huntingtin interacting protein E-like protein, at 934,922 to 936,148
GFF4020
GFF4021 - NADH dehydrogenase (EC 1.6.99.3), at 936,237 to 937,535
GFF4021
GFF4022 - Methyltransferase type 11, at 937,590 to 938,417
GFF4022
GFF4023 - PUTATIVE METHYLTRANSFERASE, at 938,432 to 939,244
GFF4023
Position (kb) 936
937
938 Strain fitness (log2 ratio) -2
-1
0
1 at 935.286 kb on + strand, within GFF4020 at 935.286 kb on + strand, within GFF4020 at 935.286 kb on + strand, within GFF4020 at 935.286 kb on + strand, within GFF4020 at 935.287 kb on - strand, within GFF4020 at 935.287 kb on - strand, within GFF4020 at 935.379 kb on + strand, within GFF4020 at 935.379 kb on + strand, within GFF4020 at 935.380 kb on - strand, within GFF4020 at 935.380 kb on - strand, within GFF4020 at 935.380 kb on - strand, within GFF4020 at 935.382 kb on + strand, within GFF4020 at 935.382 kb on + strand, within GFF4020 at 935.382 kb on + strand, within GFF4020 at 935.382 kb on + strand, within GFF4020 at 935.382 kb on + strand, within GFF4020 at 935.382 kb on + strand, within GFF4020 at 935.383 kb on - strand, within GFF4020 at 935.383 kb on - strand, within GFF4020 at 935.383 kb on - strand, within GFF4020 at 935.577 kb on + strand, within GFF4020 at 935.884 kb on - strand, within GFF4020 at 935.949 kb on + strand, within GFF4020 at 935.949 kb on + strand, within GFF4020 at 935.953 kb on - strand, within GFF4020 at 935.953 kb on - strand, within GFF4020 at 936.117 kb on + strand at 936.117 kb on + strand at 936.118 kb on - strand at 936.159 kb on - strand at 936.159 kb on - strand at 936.159 kb on - strand at 936.159 kb on - strand at 936.352 kb on + strand at 936.352 kb on + strand at 936.352 kb on + strand at 936.352 kb on + strand at 936.353 kb on - strand at 936.353 kb on - strand at 936.353 kb on - strand at 936.382 kb on + strand, within GFF4021 at 936.383 kb on - strand, within GFF4021 at 936.383 kb on - strand, within GFF4021 at 936.383 kb on - strand, within GFF4021 at 936.466 kb on + strand, within GFF4021 at 936.467 kb on - strand, within GFF4021 at 936.467 kb on - strand, within GFF4021 at 936.467 kb on - strand, within GFF4021 at 936.467 kb on - strand, within GFF4021 at 936.472 kb on + strand, within GFF4021 at 936.473 kb on - strand, within GFF4021 at 936.529 kb on + strand, within GFF4021 at 936.530 kb on - strand, within GFF4021 at 936.530 kb on - strand, within GFF4021 at 936.617 kb on - strand, within GFF4021 at 937.351 kb on + strand, within GFF4021 at 938.045 kb on - strand, within GFF4022 at 938.045 kb on - strand, within GFF4022 at 938.356 kb on + strand at 938.460 kb on + strand at 938.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 935,286 + GFF4020 0.30 +0.5 935,286 + GFF4020 0.30 -0.2 935,286 + GFF4020 0.30 -0.0 935,286 + GFF4020 0.30 +0.0 935,287 - GFF4020 0.30 +1.3 935,287 - GFF4020 0.30 +0.1 935,379 + GFF4020 0.37 -0.2 935,379 + GFF4020 0.37 +0.0 935,380 - GFF4020 0.37 +0.4 935,380 - GFF4020 0.37 -0.2 935,380 - GFF4020 0.37 +0.6 935,382 + GFF4020 0.37 +1.2 935,382 + GFF4020 0.37 -2.0 935,382 + GFF4020 0.37 -1.1 935,382 + GFF4020 0.37 -0.4 935,382 + GFF4020 0.37 -0.6 935,382 + GFF4020 0.37 -0.1 935,383 - GFF4020 0.38 +0.2 935,383 - GFF4020 0.38 -0.0 935,383 - GFF4020 0.38 -0.1 935,577 + GFF4020 0.53 -0.2 935,884 - GFF4020 0.78 -0.8 935,949 + GFF4020 0.84 +0.2 935,949 + GFF4020 0.84 -0.4 935,953 - GFF4020 0.84 -0.4 935,953 - GFF4020 0.84 -1.2 936,117 + +0.0 936,117 + -0.2 936,118 - +0.2 936,159 - +0.4 936,159 - -0.2 936,159 - -0.8 936,159 - -0.0 936,352 + -0.4 936,352 + +1.7 936,352 + -0.2 936,352 + -0.2 936,353 - +0.5 936,353 - -2.2 936,353 - +0.4 936,382 + GFF4021 0.11 -1.8 936,383 - GFF4021 0.11 -0.4 936,383 - GFF4021 0.11 +0.3 936,383 - GFF4021 0.11 +0.3 936,466 + GFF4021 0.18 +0.5 936,467 - GFF4021 0.18 -0.4 936,467 - GFF4021 0.18 -0.2 936,467 - GFF4021 0.18 +1.2 936,467 - GFF4021 0.18 +0.8 936,472 + GFF4021 0.18 -1.2 936,473 - GFF4021 0.18 +1.7 936,529 + GFF4021 0.22 +0.6 936,530 - GFF4021 0.23 +1.7 936,530 - GFF4021 0.23 +0.3 936,617 - GFF4021 0.29 +0.2 937,351 + GFF4021 0.86 -0.7 938,045 - GFF4022 0.55 +0.8 938,045 - GFF4022 0.55 -0.8 938,356 + -0.3 938,460 + -0.1 938,460 + -0.4
Or see this region's nucleotide sequence