Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3948 and GFF3949 are separated by 7 nucleotides GFF3949 and GFF3950 are separated by 1 nucleotides GFF3950 and GFF3951 are separated by 186 nucleotides GFF3951 and GFF3952 are separated by 57 nucleotides
GFF3948 - Thymidine phosphorylase (EC 2.4.2.4), at 861,901 to 864,405
GFF3948
GFF3949 - hypothetical protein, at 864,413 to 865,372
GFF3949
GFF3950 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 865,374 to 867,614
GFF3950
GFF3951 - hypothetical protein, at 867,801 to 868,070
GFF3951
GFF3952 - Transcriptional regulator, TetR family, at 868,128 to 868,718
GFF3952
Position (kb) 865
866
867
868 Strain fitness (log2 ratio) -2
-1
0
1 at 864.755 kb on + strand, within GFF3949 at 864.756 kb on - strand, within GFF3949 at 864.771 kb on - strand, within GFF3949 at 864.771 kb on - strand, within GFF3949 at 864.779 kb on + strand, within GFF3949 at 864.779 kb on + strand, within GFF3949 at 864.780 kb on - strand, within GFF3949 at 864.780 kb on - strand, within GFF3949 at 864.780 kb on - strand, within GFF3949 at 865.043 kb on + strand, within GFF3949 at 865.043 kb on + strand, within GFF3949 at 865.044 kb on - strand, within GFF3949 at 865.104 kb on + strand, within GFF3949 at 865.104 kb on + strand, within GFF3949 at 865.367 kb on + strand at 866.446 kb on + strand, within GFF3950 at 866.533 kb on + strand, within GFF3950 at 866.533 kb on + strand, within GFF3950 at 866.533 kb on + strand, within GFF3950 at 866.534 kb on - strand, within GFF3950 at 866.536 kb on + strand, within GFF3950 at 866.537 kb on - strand, within GFF3950 at 866.537 kb on - strand, within GFF3950 at 866.650 kb on + strand, within GFF3950 at 866.651 kb on - strand, within GFF3950 at 867.088 kb on + strand, within GFF3950 at 867.089 kb on - strand, within GFF3950 at 867.713 kb on - strand at 868.273 kb on - strand, within GFF3952 at 868.459 kb on - strand, within GFF3952 at 868.459 kb on - strand, within GFF3952
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 864,755 + GFF3949 0.36 -0.9 864,756 - GFF3949 0.36 +0.1 864,771 - GFF3949 0.37 +0.2 864,771 - GFF3949 0.37 -0.1 864,779 + GFF3949 0.38 +0.3 864,779 + GFF3949 0.38 +0.1 864,780 - GFF3949 0.38 -0.1 864,780 - GFF3949 0.38 +0.8 864,780 - GFF3949 0.38 +0.1 865,043 + GFF3949 0.66 -0.0 865,043 + GFF3949 0.66 -0.3 865,044 - GFF3949 0.66 -0.7 865,104 + GFF3949 0.72 -0.1 865,104 + GFF3949 0.72 -0.1 865,367 + +0.8 866,446 + GFF3950 0.48 -0.2 866,533 + GFF3950 0.52 -0.3 866,533 + GFF3950 0.52 +1.1 866,533 + GFF3950 0.52 -0.5 866,534 - GFF3950 0.52 -0.1 866,536 + GFF3950 0.52 -2.3 866,537 - GFF3950 0.52 -0.9 866,537 - GFF3950 0.52 +0.4 866,650 + GFF3950 0.57 -0.5 866,651 - GFF3950 0.57 +1.0 867,088 + GFF3950 0.76 -0.1 867,089 - GFF3950 0.77 -0.8 867,713 - -0.1 868,273 - GFF3952 0.25 -1.9 868,459 - GFF3952 0.56 -0.1 868,459 - GFF3952 0.56 +0.0
Or see this region's nucleotide sequence