Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3942 and GFF3943 are separated by 67 nucleotides GFF3943 and GFF3944 are separated by 386 nucleotides GFF3944 and GFF3945 overlap by 8 nucleotides
GFF3942 - ClpB protein, at 854,219 to 856,837
GFF3942
GFF3943 - Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68), at 856,905 to 858,335
GFF3943
GFF3944 - Rhs family protein, at 858,722 to 859,222
GFF3944
GFF3945 - hypothetical protein, at 859,215 to 859,469
GFF3945
Position (kb) 856
857
858
859 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 856.220 kb on + strand, within GFF3942 at 856.220 kb on + strand, within GFF3942 at 856.221 kb on - strand, within GFF3942 at 856.221 kb on - strand, within GFF3942 at 856.221 kb on - strand, within GFF3942 at 856.250 kb on + strand, within GFF3942 at 856.436 kb on + strand, within GFF3942 at 856.730 kb on + strand at 856.731 kb on - strand at 856.748 kb on + strand at 856.901 kb on + strand at 856.902 kb on - strand at 856.902 kb on - strand at 856.965 kb on + strand at 856.965 kb on + strand at 856.966 kb on - strand at 856.966 kb on - strand at 856.966 kb on - strand at 856.966 kb on - strand at 856.966 kb on - strand at 857.208 kb on + strand, within GFF3943 at 857.209 kb on - strand, within GFF3943 at 857.209 kb on - strand, within GFF3943 at 857.209 kb on - strand, within GFF3943 at 857.280 kb on + strand, within GFF3943 at 857.280 kb on + strand, within GFF3943 at 857.679 kb on + strand, within GFF3943 at 857.679 kb on + strand, within GFF3943 at 857.679 kb on + strand, within GFF3943 at 857.679 kb on + strand, within GFF3943 at 857.725 kb on - strand, within GFF3943 at 857.725 kb on - strand, within GFF3943 at 857.988 kb on + strand, within GFF3943 at 858.048 kb on + strand, within GFF3943 at 858.192 kb on + strand, within GFF3943 at 858.192 kb on + strand, within GFF3943 at 858.193 kb on - strand at 858.276 kb on + strand at 858.277 kb on - strand at 858.363 kb on + strand at 858.363 kb on + strand at 858.364 kb on - strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.401 kb on + strand at 858.402 kb on - strand at 858.444 kb on + strand at 858.507 kb on + strand at 858.767 kb on + strand at 858.767 kb on + strand at 858.768 kb on - strand at 858.884 kb on + strand, within GFF3944 at 858.885 kb on - strand, within GFF3944 at 858.965 kb on + strand, within GFF3944 at 858.965 kb on + strand, within GFF3944 at 859.283 kb on - strand, within GFF3945 at 859.283 kb on - strand, within GFF3945 at 859.283 kb on - strand, within GFF3945
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 856,220 + GFF3942 0.76 +0.3 856,220 + GFF3942 0.76 +0.0 856,221 - GFF3942 0.76 -0.9 856,221 - GFF3942 0.76 -1.2 856,221 - GFF3942 0.76 -1.2 856,250 + GFF3942 0.78 -0.5 856,436 + GFF3942 0.85 -0.1 856,730 + +0.5 856,731 - -0.7 856,748 + +0.0 856,901 + -0.3 856,902 - -0.2 856,902 - -0.3 856,965 + +0.0 856,965 + +0.1 856,966 - +0.2 856,966 - +0.7 856,966 - -0.6 856,966 - -0.2 856,966 - -0.9 857,208 + GFF3943 0.21 +0.1 857,209 - GFF3943 0.21 -1.1 857,209 - GFF3943 0.21 +0.4 857,209 - GFF3943 0.21 -0.3 857,280 + GFF3943 0.26 -0.0 857,280 + GFF3943 0.26 -0.9 857,679 + GFF3943 0.54 +1.4 857,679 + GFF3943 0.54 +0.5 857,679 + GFF3943 0.54 -0.5 857,679 + GFF3943 0.54 -0.3 857,725 - GFF3943 0.57 -0.2 857,725 - GFF3943 0.57 -0.2 857,988 + GFF3943 0.76 -0.4 858,048 + GFF3943 0.80 +0.0 858,192 + GFF3943 0.90 -0.6 858,192 + GFF3943 0.90 -1.2 858,193 - +0.3 858,276 + -0.2 858,277 - -0.7 858,363 + +2.9 858,363 + +0.0 858,364 - +0.1 858,398 + -0.5 858,398 + -0.5 858,401 + -0.6 858,402 - -1.0 858,444 + -0.6 858,507 + -0.3 858,767 + -0.3 858,767 + -0.2 858,768 - -0.3 858,884 + GFF3944 0.32 -0.1 858,885 - GFF3944 0.33 +0.2 858,965 + GFF3944 0.49 +0.5 858,965 + GFF3944 0.49 -0.9 859,283 - GFF3945 0.27 -1.9 859,283 - GFF3945 0.27 +1.8 859,283 - GFF3945 0.27 +0.3
Or see this region's nucleotide sequence