Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3823 and GFF3824 are separated by 31 nucleotides GFF3824 and GFF3825 are separated by 25 nucleotides GFF3825 and GFF3826 are separated by 139 nucleotides
GFF3823 - DNA primase (EC 2.7.7.-), at 729,575 to 731,575
GFF3823
GFF3824 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 731,607 to 733,511
GFF3824
GFF3825 - 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) @ 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, at 733,537 to 734,295
GFF3825
GFF3826 - UDP-galactose-lipid carrier transferase (EC 2.-.-.-), at 734,435 to 735,343
GFF3826
Position (kb) 731
732
733
734 Strain fitness (log2 ratio) -2
-1
0
1
2 at 732.307 kb on + strand, within GFF3824 at 732.373 kb on + strand, within GFF3824 at 732.373 kb on + strand, within GFF3824 at 732.373 kb on + strand, within GFF3824 at 732.374 kb on - strand, within GFF3824 at 732.374 kb on - strand, within GFF3824 at 732.374 kb on - strand, within GFF3824 at 732.415 kb on + strand, within GFF3824 at 732.415 kb on + strand, within GFF3824 at 732.416 kb on - strand, within GFF3824 at 732.416 kb on - strand, within GFF3824 at 732.815 kb on - strand, within GFF3824 at 732.815 kb on - strand, within GFF3824 at 732.820 kb on + strand, within GFF3824 at 732.820 kb on + strand, within GFF3824 at 732.821 kb on - strand, within GFF3824 at 732.821 kb on - strand, within GFF3824 at 733.350 kb on + strand at 733.350 kb on + strand at 733.350 kb on + strand at 733.351 kb on - strand at 733.474 kb on + strand at 733.474 kb on + strand at 733.519 kb on + strand at 733.519 kb on + strand at 733.520 kb on - strand at 733.520 kb on - strand at 733.538 kb on + strand at 733.628 kb on + strand, within GFF3825 at 733.629 kb on - strand, within GFF3825 at 733.850 kb on + strand, within GFF3825 at 733.851 kb on - strand, within GFF3825 at 733.985 kb on + strand, within GFF3825 at 733.985 kb on + strand, within GFF3825 at 734.275 kb on + strand at 734.275 kb on + strand at 734.275 kb on + strand at 734.275 kb on + strand at 734.276 kb on - strand at 734.276 kb on - strand at 734.276 kb on - strand at 734.338 kb on - strand at 734.359 kb on + strand at 734.359 kb on + strand at 734.360 kb on - strand at 734.360 kb on - strand at 734.360 kb on - strand at 734.401 kb on + strand at 734.401 kb on - strand at 734.402 kb on - strand at 734.492 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 732,307 + GFF3824 0.37 -1.1 732,373 + GFF3824 0.40 -0.1 732,373 + GFF3824 0.40 -0.1 732,373 + GFF3824 0.40 -1.8 732,374 - GFF3824 0.40 -0.6 732,374 - GFF3824 0.40 -0.6 732,374 - GFF3824 0.40 -0.1 732,415 + GFF3824 0.42 -0.3 732,415 + GFF3824 0.42 +0.6 732,416 - GFF3824 0.42 -0.4 732,416 - GFF3824 0.42 -0.0 732,815 - GFF3824 0.63 -0.4 732,815 - GFF3824 0.63 +1.0 732,820 + GFF3824 0.64 -1.1 732,820 + GFF3824 0.64 +0.5 732,821 - GFF3824 0.64 +2.1 732,821 - GFF3824 0.64 +0.4 733,350 + +0.5 733,350 + -0.7 733,350 + +0.7 733,351 - -0.6 733,474 + -0.4 733,474 + +1.7 733,519 + -0.2 733,519 + -0.9 733,520 - -0.4 733,520 - +0.7 733,538 + -1.9 733,628 + GFF3825 0.12 -0.4 733,629 - GFF3825 0.12 +0.6 733,850 + GFF3825 0.41 +0.6 733,851 - GFF3825 0.41 +1.2 733,985 + GFF3825 0.59 +0.2 733,985 + GFF3825 0.59 +0.3 734,275 + +0.1 734,275 + +0.5 734,275 + -0.4 734,275 + -0.4 734,276 - -2.3 734,276 - +0.2 734,276 - +0.1 734,338 - -0.0 734,359 + -0.3 734,359 + -0.3 734,360 - +0.7 734,360 - -1.3 734,360 - +0.4 734,401 + +0.5 734,401 - -0.3 734,402 - -0.6 734,492 + +0.6
Or see this region's nucleotide sequence