Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3758 and GFF3759 are separated by 78 nucleotides GFF3759 and GFF3760 overlap by 4 nucleotides GFF3760 and GFF3761 are separated by 116 nucleotides
GFF3758 - SAM-dependent methyltransferases, at 653,058 to 653,720
GFF3758
GFF3759 - PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene, at 653,799 to 654,143
GFF3759
GFF3760 - Glutathione S-transferase (EC 2.5.1.18), at 654,140 to 654,745
GFF3760
GFF3761 - Transcriptional regulator, DeoR family, at 654,862 to 655,836
GFF3761
Position (kb) 654
655 Strain fitness (log2 ratio) -2
-1
0
1 at 653.272 kb on + strand, within GFF3758 at 653.273 kb on - strand, within GFF3758 at 653.360 kb on - strand, within GFF3758 at 653.360 kb on - strand, within GFF3758 at 653.635 kb on + strand, within GFF3758 at 653.635 kb on + strand, within GFF3758 at 653.636 kb on - strand, within GFF3758 at 653.752 kb on - strand at 653.874 kb on + strand, within GFF3759 at 653.875 kb on - strand, within GFF3759 at 653.875 kb on - strand, within GFF3759 at 654.023 kb on - strand, within GFF3759 at 654.141 kb on + strand at 654.142 kb on - strand at 654.228 kb on + strand, within GFF3760 at 654.229 kb on - strand, within GFF3760 at 654.237 kb on + strand, within GFF3760 at 654.238 kb on - strand, within GFF3760 at 654.277 kb on - strand, within GFF3760 at 654.426 kb on + strand, within GFF3760 at 654.427 kb on - strand, within GFF3760 at 654.427 kb on - strand, within GFF3760 at 654.427 kb on - strand, within GFF3760 at 654.436 kb on - strand, within GFF3760 at 654.436 kb on - strand, within GFF3760 at 654.436 kb on - strand, within GFF3760 at 654.436 kb on - strand, within GFF3760 at 654.613 kb on - strand, within GFF3760 at 654.727 kb on - strand at 655.042 kb on + strand, within GFF3761 at 655.411 kb on + strand, within GFF3761 at 655.411 kb on + strand, within GFF3761 at 655.537 kb on + strand, within GFF3761 at 655.537 kb on + strand, within GFF3761 at 655.537 kb on + strand, within GFF3761 at 655.537 kb on + strand, within GFF3761 at 655.538 kb on - strand, within GFF3761 at 655.538 kb on - strand, within GFF3761 at 655.538 kb on - strand, within GFF3761 at 655.721 kb on - strand, within GFF3761 at 655.721 kb on - strand, within GFF3761
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 653,272 + GFF3758 0.32 +1.1 653,273 - GFF3758 0.32 -0.1 653,360 - GFF3758 0.46 +0.9 653,360 - GFF3758 0.46 -0.4 653,635 + GFF3758 0.87 +0.2 653,635 + GFF3758 0.87 -1.2 653,636 - GFF3758 0.87 +0.0 653,752 - +0.3 653,874 + GFF3759 0.22 +0.6 653,875 - GFF3759 0.22 -0.5 653,875 - GFF3759 0.22 -2.0 654,023 - GFF3759 0.65 +0.4 654,141 + +0.7 654,142 - -0.2 654,228 + GFF3760 0.15 +0.1 654,229 - GFF3760 0.15 +0.3 654,237 + GFF3760 0.16 -0.0 654,238 - GFF3760 0.16 +0.3 654,277 - GFF3760 0.23 -0.6 654,426 + GFF3760 0.47 +0.6 654,427 - GFF3760 0.47 -1.2 654,427 - GFF3760 0.47 +0.8 654,427 - GFF3760 0.47 +1.1 654,436 - GFF3760 0.49 -0.1 654,436 - GFF3760 0.49 -0.1 654,436 - GFF3760 0.49 -0.6 654,436 - GFF3760 0.49 +0.1 654,613 - GFF3760 0.78 +0.3 654,727 - +0.4 655,042 + GFF3761 0.18 +1.5 655,411 + GFF3761 0.56 -1.0 655,411 + GFF3761 0.56 +0.1 655,537 + GFF3761 0.69 -0.3 655,537 + GFF3761 0.69 +0.0 655,537 + GFF3761 0.69 +0.2 655,537 + GFF3761 0.69 -1.6 655,538 - GFF3761 0.69 +1.5 655,538 - GFF3761 0.69 -0.1 655,538 - GFF3761 0.69 +0.8 655,721 - GFF3761 0.88 +1.1 655,721 - GFF3761 0.88 -0.6
Or see this region's nucleotide sequence