Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3467 and GFF3468 are separated by 146 nucleotides GFF3468 and GFF3469 overlap by 4 nucleotides
GFF3467 - Transcriptional regulator, AraC family, at 348,145 to 348,570
GFF3467
GFF3468 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 348,717 to 349,862
GFF3468
GFF3469 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 349,859 to 350,929
GFF3469
Position (kb) 348
349
350 Strain fitness (log2 ratio) -1
0
1 at 347.875 kb on + strand at 347.875 kb on + strand at 347.876 kb on - strand at 347.943 kb on - strand at 348.175 kb on + strand at 348.175 kb on + strand at 348.251 kb on - strand, within GFF3467 at 348.568 kb on + strand at 348.572 kb on + strand at 348.581 kb on + strand at 348.581 kb on + strand at 348.581 kb on + strand at 348.692 kb on + strand at 348.758 kb on + strand at 348.789 kb on + strand at 348.789 kb on + strand at 348.840 kb on + strand, within GFF3468 at 348.909 kb on + strand, within GFF3468 at 349.014 kb on + strand, within GFF3468 at 349.168 kb on - strand, within GFF3468 at 349.168 kb on - strand, within GFF3468 at 349.677 kb on + strand, within GFF3468 at 349.678 kb on - strand, within GFF3468 at 349.678 kb on - strand, within GFF3468 at 349.686 kb on - strand, within GFF3468 at 349.686 kb on - strand, within GFF3468 at 349.686 kb on - strand, within GFF3468 at 349.813 kb on - strand at 350.217 kb on - strand, within GFF3469 at 350.282 kb on + strand, within GFF3469 at 350.282 kb on + strand, within GFF3469 at 350.283 kb on - strand, within GFF3469 at 350.283 kb on - strand, within GFF3469 at 350.283 kb on - strand, within GFF3469 at 350.455 kb on - strand, within GFF3469 at 350.555 kb on + strand, within GFF3469 at 350.564 kb on + strand, within GFF3469 at 350.564 kb on + strand, within GFF3469 at 350.565 kb on - strand, within GFF3469 at 350.605 kb on - strand, within GFF3469 at 350.840 kb on + strand at 350.841 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 347,875 + +0.2 347,875 + -0.1 347,876 - +1.1 347,943 - -0.3 348,175 + -0.9 348,175 + +0.3 348,251 - GFF3467 0.25 +0.6 348,568 + +0.8 348,572 + +0.8 348,581 + -1.7 348,581 + -0.5 348,581 + -0.5 348,692 + +1.6 348,758 + -0.2 348,789 + +0.1 348,789 + -1.1 348,840 + GFF3468 0.11 +0.1 348,909 + GFF3468 0.17 -1.2 349,014 + GFF3468 0.26 +1.0 349,168 - GFF3468 0.39 +0.4 349,168 - GFF3468 0.39 -1.5 349,677 + GFF3468 0.84 -0.8 349,678 - GFF3468 0.84 +0.4 349,678 - GFF3468 0.84 +0.5 349,686 - GFF3468 0.85 +0.1 349,686 - GFF3468 0.85 +1.1 349,686 - GFF3468 0.85 +1.0 349,813 - +0.2 350,217 - GFF3469 0.33 -0.0 350,282 + GFF3469 0.39 +1.1 350,282 + GFF3469 0.39 -0.1 350,283 - GFF3469 0.40 -0.1 350,283 - GFF3469 0.40 -0.3 350,283 - GFF3469 0.40 -0.1 350,455 - GFF3469 0.56 +0.3 350,555 + GFF3469 0.65 +0.3 350,564 + GFF3469 0.66 +0.8 350,564 + GFF3469 0.66 +0.1 350,565 - GFF3469 0.66 -0.8 350,605 - GFF3469 0.70 +0.5 350,840 + -0.3 350,841 - -0.2
Or see this region's nucleotide sequence