Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3338 and GFF3339 are separated by 82 nucleotides GFF3339 and GFF3340 are separated by 69 nucleotides GFF3340 and GFF3341 are separated by 18 nucleotides
GFF3338 - hypothetical protein, at 223,435 to 223,569
GFF3338
GFF3339 - RNA polymerase sigma factor RpoE, at 223,652 to 224,245
GFF3339
GFF3340 - Sigma factor RpoE negative regulatory protein RseA, at 224,315 to 225,019
GFF3340
GFF3341 - Sigma factor RpoE negative regulatory protein RseB precursor, at 225,038 to 226,087
GFF3341
Position (kb) 224
225
226 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 223.589 kb on + strand at 223.589 kb on + strand at 223.590 kb on - strand at 223.591 kb on + strand at 223.591 kb on + strand at 223.591 kb on + strand at 223.591 kb on + strand at 223.592 kb on - strand at 223.592 kb on - strand at 223.592 kb on - strand at 223.712 kb on + strand, within GFF3339 at 223.712 kb on + strand, within GFF3339 at 223.713 kb on - strand, within GFF3339 at 223.713 kb on - strand, within GFF3339 at 223.713 kb on - strand, within GFF3339 at 223.713 kb on - strand, within GFF3339 at 223.802 kb on + strand, within GFF3339 at 223.803 kb on - strand, within GFF3339 at 223.803 kb on - strand, within GFF3339 at 223.803 kb on - strand, within GFF3339 at 223.841 kb on + strand, within GFF3339 at 223.841 kb on + strand, within GFF3339 at 223.842 kb on - strand, within GFF3339 at 223.842 kb on - strand, within GFF3339 at 223.842 kb on - strand, within GFF3339 at 223.842 kb on - strand, within GFF3339 at 223.854 kb on - strand, within GFF3339 at 223.975 kb on - strand, within GFF3339 at 224.117 kb on + strand, within GFF3339 at 224.117 kb on + strand, within GFF3339 at 224.117 kb on + strand, within GFF3339 at 224.118 kb on - strand, within GFF3339 at 224.118 kb on - strand, within GFF3339 at 224.118 kb on - strand, within GFF3339 at 224.118 kb on - strand, within GFF3339 at 224.118 kb on - strand, within GFF3339 at 224.118 kb on - strand, within GFF3339 at 224.118 kb on - strand, within GFF3339 at 224.243 kb on + strand at 224.244 kb on - strand at 224.244 kb on - strand at 224.244 kb on - strand at 224.244 kb on - strand at 224.244 kb on - strand at 224.489 kb on + strand, within GFF3340 at 224.490 kb on - strand, within GFF3340 at 224.490 kb on - strand, within GFF3340 at 224.999 kb on + strand at 224.999 kb on + strand at 224.999 kb on + strand at 225.000 kb on - strand at 225.000 kb on - strand at 225.000 kb on - strand at 225.000 kb on - strand at 225.000 kb on - strand at 225.037 kb on + strand at 225.037 kb on + strand at 225.037 kb on + strand at 225.037 kb on + strand at 225.038 kb on - strand at 225.038 kb on - strand at 225.245 kb on + strand, within GFF3341 at 225.245 kb on + strand, within GFF3341 at 225.245 kb on + strand, within GFF3341 at 225.245 kb on + strand, within GFF3341 at 225.245 kb on + strand, within GFF3341 at 225.246 kb on - strand, within GFF3341 at 225.246 kb on - strand, within GFF3341 at 225.246 kb on - strand, within GFF3341 at 225.246 kb on - strand, within GFF3341 at 225.246 kb on - strand, within GFF3341 at 225.246 kb on - strand, within GFF3341 at 225.494 kb on + strand, within GFF3341 at 225.494 kb on + strand, within GFF3341 at 225.494 kb on + strand, within GFF3341 at 225.494 kb on + strand, within GFF3341 at 225.495 kb on - strand, within GFF3341 at 225.495 kb on - strand, within GFF3341 at 225.495 kb on - strand, within GFF3341 at 225.495 kb on - strand, within GFF3341 at 225.495 kb on - strand, within GFF3341 at 225.544 kb on + strand, within GFF3341 at 225.544 kb on + strand, within GFF3341 at 225.545 kb on - strand, within GFF3341 at 225.743 kb on + strand, within GFF3341
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 223,589 + -0.7 223,589 + +0.3 223,590 - -0.9 223,591 + +1.7 223,591 + -0.8 223,591 + +0.8 223,591 + +0.1 223,592 - -0.0 223,592 - -0.4 223,592 - -0.6 223,712 + GFF3339 0.10 -0.3 223,712 + GFF3339 0.10 -0.8 223,713 - GFF3339 0.10 -1.5 223,713 - GFF3339 0.10 -1.7 223,713 - GFF3339 0.10 -2.4 223,713 - GFF3339 0.10 -0.9 223,802 + GFF3339 0.25 -0.7 223,803 - GFF3339 0.25 +0.2 223,803 - GFF3339 0.25 +1.1 223,803 - GFF3339 0.25 -0.3 223,841 + GFF3339 0.32 +0.1 223,841 + GFF3339 0.32 -0.7 223,842 - GFF3339 0.32 -1.6 223,842 - GFF3339 0.32 -0.8 223,842 - GFF3339 0.32 -0.0 223,842 - GFF3339 0.32 -1.7 223,854 - GFF3339 0.34 -0.9 223,975 - GFF3339 0.54 -1.3 224,117 + GFF3339 0.78 -1.2 224,117 + GFF3339 0.78 +0.2 224,117 + GFF3339 0.78 -0.7 224,118 - GFF3339 0.78 +0.3 224,118 - GFF3339 0.78 +0.0 224,118 - GFF3339 0.78 -1.0 224,118 - GFF3339 0.78 -2.2 224,118 - GFF3339 0.78 -1.0 224,118 - GFF3339 0.78 -2.0 224,118 - GFF3339 0.78 -1.0 224,243 + -2.9 224,244 - +0.3 224,244 - -0.3 224,244 - -0.0 224,244 - -1.5 224,244 - -1.3 224,489 + GFF3340 0.25 -3.1 224,490 - GFF3340 0.25 -2.0 224,490 - GFF3340 0.25 -3.0 224,999 + -2.9 224,999 + -0.5 224,999 + -2.3 225,000 - -1.4 225,000 - -0.3 225,000 - -1.7 225,000 - -1.3 225,000 - -1.8 225,037 + +0.1 225,037 + -0.8 225,037 + -0.2 225,037 + -0.4 225,038 - -0.2 225,038 - +0.7 225,245 + GFF3341 0.20 -1.6 225,245 + GFF3341 0.20 -1.5 225,245 + GFF3341 0.20 -0.9 225,245 + GFF3341 0.20 -2.3 225,245 + GFF3341 0.20 -2.3 225,246 - GFF3341 0.20 -1.9 225,246 - GFF3341 0.20 -1.7 225,246 - GFF3341 0.20 -2.3 225,246 - GFF3341 0.20 -2.5 225,246 - GFF3341 0.20 -1.8 225,246 - GFF3341 0.20 +0.1 225,494 + GFF3341 0.43 -2.9 225,494 + GFF3341 0.43 -1.4 225,494 + GFF3341 0.43 -2.1 225,494 + GFF3341 0.43 -3.5 225,495 - GFF3341 0.44 -1.7 225,495 - GFF3341 0.44 -2.6 225,495 - GFF3341 0.44 -0.7 225,495 - GFF3341 0.44 -1.5 225,495 - GFF3341 0.44 -1.9 225,544 + GFF3341 0.48 -1.6 225,544 + GFF3341 0.48 -1.5 225,545 - GFF3341 0.48 -4.9 225,743 + GFF3341 0.67 -1.9
Or see this region's nucleotide sequence