Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3151 and GFF3152 are separated by 157 nucleotides GFF3152 and GFF3153 are separated by 374 nucleotides GFF3153 and GFF3154 are separated by 164 nucleotides GFF3154 and GFF3155 are separated by 230 nucleotides
GFF3151 - hypothetical protein, at 28,781 to 29,143
GFF3151
GFF3152 - FIG003465: Conjugative transfer outer membrane protein, at 29,301 to 29,651
GFF3152
GFF3153 - Conjugative transfer transglycosylase, at 30,026 to 30,559
GFF3153
GFF3154 - hypothetical protein, at 30,724 to 31,221
GFF3154
GFF3155 - hypothetical protein, at 31,452 to 32,297
GFF3155
Position (kb) 30
31 Strain fitness (log2 ratio) -2
-1
0
1 at 30.132 kb on + strand, within GFF3153 at 30.133 kb on - strand, within GFF3153 at 30.147 kb on + strand, within GFF3153 at 30.147 kb on + strand, within GFF3153 at 30.147 kb on + strand, within GFF3153 at 30.148 kb on - strand, within GFF3153 at 30.148 kb on - strand, within GFF3153 at 30.148 kb on - strand, within GFF3153 at 30.204 kb on + strand, within GFF3153 at 30.204 kb on + strand, within GFF3153 at 30.204 kb on + strand, within GFF3153 at 30.204 kb on + strand, within GFF3153 at 30.205 kb on - strand, within GFF3153 at 30.205 kb on - strand, within GFF3153 at 30.205 kb on - strand, within GFF3153 at 30.205 kb on - strand, within GFF3153 at 30.448 kb on - strand, within GFF3153 at 30.623 kb on + strand at 30.624 kb on - strand at 30.725 kb on + strand at 30.726 kb on - strand at 30.774 kb on + strand, within GFF3154 at 30.774 kb on + strand, within GFF3154 at 30.774 kb on + strand, within GFF3154 at 30.775 kb on - strand, within GFF3154 at 30.775 kb on - strand, within GFF3154 at 31.109 kb on + strand, within GFF3154 at 31.110 kb on - strand, within GFF3154 at 31.281 kb on + strand at 31.282 kb on - strand at 31.394 kb on - strand at 31.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 30,132 + GFF3153 0.20 -0.5 30,133 - GFF3153 0.20 +0.8 30,147 + GFF3153 0.23 +0.1 30,147 + GFF3153 0.23 -0.9 30,147 + GFF3153 0.23 +0.4 30,148 - GFF3153 0.23 +0.6 30,148 - GFF3153 0.23 +0.3 30,148 - GFF3153 0.23 +0.1 30,204 + GFF3153 0.33 -0.0 30,204 + GFF3153 0.33 +0.1 30,204 + GFF3153 0.33 +0.3 30,204 + GFF3153 0.33 -0.2 30,205 - GFF3153 0.34 +0.7 30,205 - GFF3153 0.34 +0.2 30,205 - GFF3153 0.34 +0.1 30,205 - GFF3153 0.34 -0.2 30,448 - GFF3153 0.79 +0.7 30,623 + -0.5 30,624 - -0.5 30,725 + +0.2 30,726 - -0.4 30,774 + GFF3154 0.10 +0.5 30,774 + GFF3154 0.10 -0.3 30,774 + GFF3154 0.10 +1.6 30,775 - GFF3154 0.10 +0.5 30,775 - GFF3154 0.10 -0.9 31,109 + GFF3154 0.77 +0.4 31,110 - GFF3154 0.78 -0.6 31,281 + -1.8 31,282 - -0.5 31,394 - -0.5 31,394 - -0.1
Or see this region's nucleotide sequence