Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3106

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3104 and GFF3105 are separated by 172 nucleotidesGFF3105 and GFF3106 are separated by 60 nucleotidesGFF3106 and GFF3107 overlap by 4 nucleotidesGFF3107 and GFF3108 overlap by 4 nucleotides GFF3104 - FIG026291: Hypothetical periplasmic protein, at 181,465 to 182,040 GFF3104 GFF3105 - hypothetical protein, at 182,213 to 182,407 GFF3105 GFF3106 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 182,468 to 183,967 GFF3106 GFF3107 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 183,964 to 184,554 GFF3107 GFF3108 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 184,551 to 185,618 GFF3108 Position (kb) 182 183 184Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 181.547 kb on + strand, within GFF3104at 181.547 kb on + strand, within GFF3104at 181.547 kb on + strand, within GFF3104at 181.547 kb on + strand, within GFF3104at 181.548 kb on - strand, within GFF3104at 181.548 kb on - strand, within GFF3104at 181.548 kb on - strand, within GFF3104at 181.548 kb on - strand, within GFF3104at 181.548 kb on - strand, within GFF3104at 181.862 kb on + strand, within GFF3104at 181.862 kb on + strand, within GFF3104at 181.862 kb on + strand, within GFF3104at 181.862 kb on + strand, within GFF3104at 181.863 kb on - strand, within GFF3104at 181.878 kb on - strand, within GFF3104at 181.878 kb on - strand, within GFF3104at 181.898 kb on + strand, within GFF3104at 182.164 kb on + strandat 182.215 kb on - strandat 182.310 kb on + strand, within GFF3105at 182.310 kb on + strand, within GFF3105at 182.310 kb on + strand, within GFF3105at 182.311 kb on - strand, within GFF3105at 182.510 kb on + strandat 182.510 kb on + strandat 182.510 kb on + strandat 182.510 kb on + strandat 182.510 kb on + strandat 182.511 kb on - strandat 182.511 kb on - strandat 182.511 kb on - strandat 182.511 kb on - strandat 182.570 kb on + strandat 182.571 kb on - strandat 182.654 kb on + strand, within GFF3106at 182.855 kb on + strand, within GFF3106at 182.856 kb on - strand, within GFF3106at 182.856 kb on - strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 183.005 kb on + strand, within GFF3106at 183.005 kb on + strand, within GFF3106at 183.006 kb on - strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.033 kb on - strand, within GFF3106at 183.033 kb on - strand, within GFF3106at 183.033 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.153 kb on - strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.263 kb on + strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.587 kb on + strand, within GFF3106at 183.588 kb on - strand, within GFF3106at 183.588 kb on - strand, within GFF3106at 183.755 kb on + strand, within GFF3106at 183.755 kb on + strand, within GFF3106at 183.756 kb on - strand, within GFF3106at 183.756 kb on - strand, within GFF3106at 183.756 kb on - strand, within GFF3106at 183.773 kb on + strand, within GFF3106at 183.773 kb on + strand, within GFF3106at 183.774 kb on - strand, within GFF3106at 183.774 kb on - strand, within GFF3106at 183.782 kb on + strand, within GFF3106at 183.783 kb on - strand, within GFF3106at 183.783 kb on - strand, within GFF3106at 183.845 kb on + strandat 183.845 kb on + strandat 183.845 kb on + strandat 183.846 kb on - strandat 183.997 kb on + strandat 183.997 kb on + strandat 183.997 kb on + strandat 183.997 kb on + strandat 183.998 kb on - strandat 183.998 kb on - strandat 183.998 kb on - strandat 183.998 kb on - strandat 184.027 kb on + strand, within GFF3107at 184.027 kb on + strand, within GFF3107at 184.028 kb on - strand, within GFF3107at 184.559 kb on - strandat 184.782 kb on + strand, within GFF3108at 184.782 kb on + strand, within GFF3108at 184.783 kb on - strand, within GFF3108at 184.783 kb on - strand, within GFF3108at 184.809 kb on + strand, within GFF3108at 184.809 kb on + strand, within GFF3108at 184.809 kb on + strand, within GFF3108at 184.809 kb on + strand, within GFF3108at 184.810 kb on - strand, within GFF3108at 184.810 kb on - strand, within GFF3108at 184.810 kb on - strand, within GFF3108at 184.810 kb on - strand, within GFF3108at 184.815 kb on + strand, within GFF3108at 184.816 kb on - strand, within GFF3108at 184.816 kb on - strand, within GFF3108at 184.816 kb on - strand, within GFF3108

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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181,547 + GFF3104 0.14 -0.3
181,547 + GFF3104 0.14 +0.3
181,547 + GFF3104 0.14 +1.6
181,547 + GFF3104 0.14 -0.1
181,548 - GFF3104 0.14 +0.1
181,548 - GFF3104 0.14 -0.2
181,548 - GFF3104 0.14 -0.1
181,548 - GFF3104 0.14 -0.6
181,548 - GFF3104 0.14 +1.1
181,862 + GFF3104 0.69 +1.0
181,862 + GFF3104 0.69 -0.1
181,862 + GFF3104 0.69 +0.6
181,862 + GFF3104 0.69 -0.3
181,863 - GFF3104 0.69 +0.1
181,878 - GFF3104 0.72 +0.3
181,878 - GFF3104 0.72 -1.7
181,898 + GFF3104 0.75 -2.2
182,164 + +0.5
182,215 - +0.1
182,310 + GFF3105 0.50 +0.1
182,310 + GFF3105 0.50 -0.5
182,310 + GFF3105 0.50 +1.8
182,311 - GFF3105 0.50 +1.1
182,510 + +0.1
182,510 + -5.4
182,510 + -4.5
182,510 + -4.3
182,510 + -2.9
182,511 - -5.1
182,511 - -3.3
182,511 - -0.5
182,511 - -1.4
182,570 + -1.5
182,571 - -2.8
182,654 + GFF3106 0.12 -3.3
182,855 + GFF3106 0.26 -1.9
182,856 - GFF3106 0.26 -4.0
182,856 - GFF3106 0.26 -2.1
182,993 + GFF3106 0.35 -5.9
182,993 + GFF3106 0.35 -2.9
182,993 + GFF3106 0.35 -3.2
182,993 + GFF3106 0.35 -4.3
182,993 + GFF3106 0.35 -3.9
182,994 - GFF3106 0.35 -5.5
182,994 - GFF3106 0.35 -3.0
182,994 - GFF3106 0.35 -2.4
182,994 - GFF3106 0.35 -1.5
182,994 - GFF3106 0.35 -2.5
183,005 + GFF3106 0.36 -4.1
183,005 + GFF3106 0.36 -1.3
183,006 - GFF3106 0.36 -4.7
183,032 + GFF3106 0.38 -1.9
183,032 + GFF3106 0.38 -2.1
183,032 + GFF3106 0.38 -2.7
183,032 + GFF3106 0.38 -3.6
183,032 + GFF3106 0.38 -2.4
183,033 - GFF3106 0.38 -1.3
183,033 - GFF3106 0.38 -3.6
183,033 - GFF3106 0.38 -2.9
183,081 - GFF3106 0.41 -3.0
183,081 - GFF3106 0.41 -5.6
183,081 - GFF3106 0.41 -5.3
183,081 - GFF3106 0.41 -1.9
183,081 - GFF3106 0.41 -2.5
183,153 - GFF3106 0.46 +0.1
183,239 + GFF3106 0.51 -3.0
183,239 + GFF3106 0.51 -6.2
183,239 + GFF3106 0.51 -5.7
183,239 + GFF3106 0.51 -1.3
183,239 + GFF3106 0.51 -4.8
183,263 + GFF3106 0.53 -2.5
183,297 - GFF3106 0.55 -4.3
183,297 - GFF3106 0.55 -2.6
183,297 - GFF3106 0.55 -5.1
183,297 - GFF3106 0.55 -2.3
183,297 - GFF3106 0.55 -2.5
183,297 - GFF3106 0.55 -4.9
183,297 - GFF3106 0.55 -5.3
183,302 + GFF3106 0.56 -1.3
183,302 + GFF3106 0.56 -4.4
183,302 + GFF3106 0.56 -3.2
183,302 + GFF3106 0.56 -4.1
183,302 + GFF3106 0.56 -0.5
183,302 + GFF3106 0.56 -3.9
183,302 + GFF3106 0.56 -3.9
183,302 + GFF3106 0.56 -3.5
183,302 + GFF3106 0.56 -5.8
183,302 + GFF3106 0.56 -2.1
183,302 + GFF3106 0.56 -1.9
183,302 + GFF3106 0.56 -3.9
183,302 + GFF3106 0.56 -4.6
183,303 - GFF3106 0.56 -1.9
183,303 - GFF3106 0.56 -4.9
183,303 - GFF3106 0.56 -1.5
183,303 - GFF3106 0.56 -2.7
183,303 - GFF3106 0.56 -2.8
183,303 - GFF3106 0.56 -4.3
183,303 - GFF3106 0.56 -1.7
183,303 - GFF3106 0.56 -4.8
183,303 - GFF3106 0.56 -1.3
183,303 - GFF3106 0.56 -4.2
183,303 - GFF3106 0.56 -2.8
183,303 - GFF3106 0.56 -3.6
183,305 + GFF3106 0.56 -4.8
183,305 + GFF3106 0.56 -2.6
183,305 + GFF3106 0.56 -4.0
183,305 + GFF3106 0.56 -2.7
183,305 + GFF3106 0.56 -3.3
183,305 + GFF3106 0.56 -1.9
183,305 + GFF3106 0.56 -4.5
183,306 - GFF3106 0.56 -1.3
183,306 - GFF3106 0.56 -2.1
183,306 - GFF3106 0.56 -3.1
183,306 - GFF3106 0.56 -3.4
183,306 - GFF3106 0.56 -0.9
183,306 - GFF3106 0.56 -0.9
183,306 - GFF3106 0.56 -1.9
183,587 + GFF3106 0.75 -3.0
183,588 - GFF3106 0.75 -4.3
183,588 - GFF3106 0.75 -0.9
183,755 + GFF3106 0.86 -0.5
183,755 + GFF3106 0.86 -2.4
183,756 - GFF3106 0.86 -3.1
183,756 - GFF3106 0.86 -5.8
183,756 - GFF3106 0.86 -1.5
183,773 + GFF3106 0.87 -3.5
183,773 + GFF3106 0.87 -5.2
183,774 - GFF3106 0.87 -6.9
183,774 - GFF3106 0.87 -4.1
183,782 + GFF3106 0.88 -3.6
183,783 - GFF3106 0.88 -1.3
183,783 - GFF3106 0.88 -4.5
183,845 + -5.7
183,845 + -2.1
183,845 + -5.8
183,846 - -4.7
183,997 + -1.8
183,997 + -3.6
183,997 + -1.7
183,997 + -0.9
183,998 - -3.0
183,998 - -1.5
183,998 - -1.7
183,998 - -6.7
184,027 + GFF3107 0.11 -5.0
184,027 + GFF3107 0.11 -3.5
184,028 - GFF3107 0.11 -4.3
184,559 - -2.6
184,782 + GFF3108 0.22 +0.6
184,782 + GFF3108 0.22 +0.6
184,783 - GFF3108 0.22 +1.3
184,783 - GFF3108 0.22 -0.7
184,809 + GFF3108 0.24 -1.3
184,809 + GFF3108 0.24 -0.3
184,809 + GFF3108 0.24 +0.1
184,809 + GFF3108 0.24 +0.3
184,810 - GFF3108 0.24 +0.6
184,810 - GFF3108 0.24 +0.5
184,810 - GFF3108 0.24 -0.2
184,810 - GFF3108 0.24 +0.2
184,815 + GFF3108 0.25 -1.8
184,816 - GFF3108 0.25 -0.7
184,816 - GFF3108 0.25 +0.5
184,816 - GFF3108 0.25 -0.5

Or see this region's nucleotide sequence