Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3060

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
138,579	+				+1.9
138,579	+				-1.0
138,580	-				-0.4
138,729	+		GFF3059	0.19	+0.4
138,729	+		GFF3059	0.19	+0.6
138,730	-		GFF3059	0.19	-1.3
138,730	-		GFF3059	0.19	-0.3
138,765	+		GFF3059	0.24	-0.9
138,765	+		GFF3059	0.24	-4.1
138,915	+		GFF3059	0.43	-2.4
138,916	-		GFF3059	0.43	-2.1
139,027	-		GFF3059	0.57	-0.7
139,027	-		GFF3059	0.57	-1.0
139,110	+		GFF3059	0.68	-0.4
139,110	+		GFF3059	0.68	-0.4
139,379	+				-0.7
139,598	+		GFF3060	0.13	-1.7
139,598	+		GFF3060	0.13	-1.3
139,598	+		GFF3060	0.13	-1.6
139,598	+		GFF3060	0.13	-0.6
139,598	+		GFF3060	0.13	-1.8
139,599	-		GFF3060	0.13	-1.2
139,599	-		GFF3060	0.13	-1.0
139,599	-		GFF3060	0.13	-0.1
139,613	+		GFF3060	0.14	-0.5
139,619	+		GFF3060	0.14	+1.1
139,727	+		GFF3060	0.21	-0.7
139,815	-		GFF3060	0.26	-0.6
139,815	-		GFF3060	0.26	-1.3
139,862	+		GFF3060	0.29	-0.3
139,862	+		GFF3060	0.29	-1.8
139,862	+		GFF3060	0.29	-0.9
139,863	-		GFF3060	0.29	-0.9
139,863	-		GFF3060	0.29	-2.6
139,863	-		GFF3060	0.29	-0.6
139,863	-		GFF3060	0.29	-1.3
139,863	-		GFF3060	0.29	-0.3
139,991	+		GFF3060	0.36	-2.1
140,100	-		GFF3060	0.43	-1.7
140,855	+		GFF3060	0.87	-0.4
140,855	+		GFF3060	0.87	-2.3
140,891	+		GFF3060	0.90	-3.3
140,891	+		GFF3060	0.90	-1.5
140,892	-		GFF3060	0.90	-1.2
141,274	+		GFF3061	0.30	-1.1
141,274	+		GFF3061	0.30	-1.4
141,457	+		GFF3061	0.59	-1.2
141,680	+				-1.1
141,681	-				-0.2
141,776	-				-0.8