Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3041

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3040 and GFF3041 are separated by 348 nucleotidesGFF3041 and GFF3042 are separated by 89 nucleotidesGFF3042 and GFF3043 are separated by 52 nucleotides GFF3040 - Malate synthase G (EC 2.3.3.9), at 119,097 to 121,307 GFF3040 GFF3041 - Outer membrane protein (porin), at 121,656 to 122,759 GFF3041 GFF3042 - Transcriptional regulator, IclR family, at 122,849 to 123,643 GFF3042 GFF3043 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 123,696 to 124,619 GFF3043 Position (kb) 121 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 120.788 kb on - strand, within GFF3040at 120.788 kb on - strand, within GFF3040at 120.788 kb on - strand, within GFF3040at 120.821 kb on - strand, within GFF3040at 120.881 kb on - strand, within GFF3040at 120.892 kb on + strand, within GFF3040at 120.931 kb on + strand, within GFF3040at 120.931 kb on + strand, within GFF3040at 121.039 kb on + strand, within GFF3040at 121.361 kb on + strandat 121.361 kb on + strandat 121.361 kb on + strandat 121.362 kb on - strandat 121.362 kb on - strandat 121.372 kb on + strandat 121.372 kb on + strandat 121.372 kb on + strandat 121.372 kb on + strandat 121.373 kb on - strandat 121.373 kb on - strandat 121.394 kb on + strandat 121.395 kb on - strandat 121.435 kb on + strandat 121.435 kb on + strandat 121.436 kb on - strandat 121.471 kb on + strandat 121.472 kb on - strandat 121.472 kb on - strandat 121.472 kb on - strandat 121.511 kb on + strandat 121.512 kb on - strandat 121.560 kb on - strandat 121.694 kb on + strandat 121.694 kb on + strandat 121.695 kb on - strandat 121.695 kb on - strandat 121.695 kb on - strandat 121.699 kb on + strandat 121.699 kb on + strandat 121.699 kb on + strandat 121.699 kb on + strandat 121.699 kb on + strandat 121.699 kb on + strandat 121.700 kb on - strandat 121.700 kb on - strandat 121.791 kb on + strand, within GFF3041at 121.791 kb on + strand, within GFF3041at 121.792 kb on - strand, within GFF3041at 121.792 kb on - strand, within GFF3041at 121.792 kb on - strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.809 kb on + strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.810 kb on - strand, within GFF3041at 121.835 kb on + strand, within GFF3041at 121.836 kb on - strand, within GFF3041at 121.836 kb on - strand, within GFF3041at 121.844 kb on + strand, within GFF3041at 121.976 kb on - strand, within GFF3041at 122.070 kb on + strand, within GFF3041at 122.070 kb on + strand, within GFF3041at 122.070 kb on + strand, within GFF3041at 122.071 kb on - strand, within GFF3041at 122.214 kb on + strand, within GFF3041at 122.214 kb on + strand, within GFF3041at 122.214 kb on + strand, within GFF3041at 122.214 kb on + strand, within GFF3041at 122.214 kb on + strand, within GFF3041at 122.214 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.256 kb on + strand, within GFF3041at 122.257 kb on - strand, within GFF3041at 122.257 kb on - strand, within GFF3041at 122.257 kb on - strand, within GFF3041at 122.257 kb on - strand, within GFF3041at 122.322 kb on + strand, within GFF3041at 122.322 kb on + strand, within GFF3041at 122.322 kb on + strand, within GFF3041at 122.322 kb on + strand, within GFF3041at 122.323 kb on - strand, within GFF3041at 122.323 kb on - strand, within GFF3041at 122.422 kb on - strand, within GFF3041at 122.422 kb on - strand, within GFF3041at 122.422 kb on - strand, within GFF3041at 122.502 kb on + strand, within GFF3041at 122.503 kb on - strand, within GFF3041at 122.585 kb on + strand, within GFF3041at 122.592 kb on - strand, within GFF3041at 122.661 kb on + strandat 122.661 kb on + strandat 122.662 kb on - strandat 122.662 kb on - strandat 122.662 kb on - strandat 122.711 kb on + strandat 122.712 kb on - strandat 122.712 kb on - strandat 123.198 kb on + strand, within GFF3042at 123.246 kb on + strand, within GFF3042at 123.247 kb on - strand, within GFF3042at 123.327 kb on + strand, within GFF3042at 123.327 kb on + strand, within GFF3042at 123.327 kb on + strand, within GFF3042at 123.327 kb on + strand, within GFF3042at 123.328 kb on - strand, within GFF3042at 123.328 kb on - strand, within GFF3042at 123.328 kb on - strand, within GFF3042at 123.367 kb on - strand, within GFF3042at 123.645 kb on - strandat 123.685 kb on + strandat 123.686 kb on - strandat 123.686 kb on - strandat 123.686 kb on - strandat 123.688 kb on - strandat 123.688 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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120,788 - GFF3040 0.76 +1.5
120,788 - GFF3040 0.76 +1.4
120,788 - GFF3040 0.76 +1.9
120,821 - GFF3040 0.78 +1.3
120,881 - GFF3040 0.81 +1.6
120,892 + GFF3040 0.81 +2.4
120,931 + GFF3040 0.83 +1.5
120,931 + GFF3040 0.83 +0.7
121,039 + GFF3040 0.88 +1.8
121,361 + +0.5
121,361 + +0.7
121,361 + +0.5
121,362 - +0.6
121,362 - +1.1
121,372 + +0.3
121,372 + -1.4
121,372 + +0.3
121,372 + -0.1
121,373 - -1.9
121,373 - -0.0
121,394 + +0.5
121,395 - +0.2
121,435 + +0.5
121,435 + +1.8
121,436 - -0.7
121,471 + +0.7
121,472 - -0.5
121,472 - -0.1
121,472 - +1.1
121,511 + -0.4
121,512 - +0.1
121,560 - +0.4
121,694 + +0.1
121,694 + +0.3
121,695 - -2.9
121,695 - +0.9
121,695 - +0.2
121,699 + +1.4
121,699 + +0.0
121,699 + +0.2
121,699 + +0.2
121,699 + -0.3
121,699 + -1.1
121,700 - +0.4
121,700 - -0.6
121,791 + GFF3041 0.12 +0.8
121,791 + GFF3041 0.12 -0.1
121,792 - GFF3041 0.12 -0.5
121,792 - GFF3041 0.12 +0.5
121,792 - GFF3041 0.12 -0.3
121,809 + GFF3041 0.14 -0.5
121,809 + GFF3041 0.14 -0.3
121,809 + GFF3041 0.14 +0.6
121,809 + GFF3041 0.14 +1.6
121,809 + GFF3041 0.14 +1.1
121,809 + GFF3041 0.14 +1.1
121,809 + GFF3041 0.14 +0.8
121,809 + GFF3041 0.14 -0.3
121,809 + GFF3041 0.14 +0.2
121,809 + GFF3041 0.14 +0.8
121,809 + GFF3041 0.14 +1.6
121,809 + GFF3041 0.14 -0.4
121,809 + GFF3041 0.14 +0.4
121,809 + GFF3041 0.14 +0.7
121,809 + GFF3041 0.14 -0.5
121,809 + GFF3041 0.14 -0.7
121,809 + GFF3041 0.14 -0.1
121,809 + GFF3041 0.14 -0.2
121,809 + GFF3041 0.14 -0.6
121,810 - GFF3041 0.14 -1.7
121,810 - GFF3041 0.14 -0.4
121,810 - GFF3041 0.14 +0.3
121,810 - GFF3041 0.14 +0.3
121,810 - GFF3041 0.14 -0.1
121,810 - GFF3041 0.14 +1.1
121,810 - GFF3041 0.14 -0.6
121,810 - GFF3041 0.14 -0.4
121,835 + GFF3041 0.16 +1.1
121,836 - GFF3041 0.16 -2.1
121,836 - GFF3041 0.16 +0.1
121,844 + GFF3041 0.17 -0.3
121,976 - GFF3041 0.29 +1.0
122,070 + GFF3041 0.38 +0.6
122,070 + GFF3041 0.38 -0.3
122,070 + GFF3041 0.38 -1.4
122,071 - GFF3041 0.38 -0.1
122,214 + GFF3041 0.51 +0.1
122,214 + GFF3041 0.51 -0.3
122,214 + GFF3041 0.51 +0.1
122,214 + GFF3041 0.51 -0.9
122,214 + GFF3041 0.51 -0.2
122,214 + GFF3041 0.51 +0.1
122,256 + GFF3041 0.54 -0.8
122,256 + GFF3041 0.54 -0.4
122,256 + GFF3041 0.54 +0.1
122,256 + GFF3041 0.54 +0.1
122,256 + GFF3041 0.54 -0.1
122,256 + GFF3041 0.54 -0.2
122,256 + GFF3041 0.54 -0.1
122,257 - GFF3041 0.54 -0.5
122,257 - GFF3041 0.54 +0.2
122,257 - GFF3041 0.54 -1.3
122,257 - GFF3041 0.54 +0.4
122,322 + GFF3041 0.60 +0.0
122,322 + GFF3041 0.60 -0.8
122,322 + GFF3041 0.60 -0.9
122,322 + GFF3041 0.60 -0.7
122,323 - GFF3041 0.60 -0.0
122,323 - GFF3041 0.60 +0.6
122,422 - GFF3041 0.69 +0.4
122,422 - GFF3041 0.69 +0.9
122,422 - GFF3041 0.69 -0.1
122,502 + GFF3041 0.77 -0.3
122,503 - GFF3041 0.77 +0.2
122,585 + GFF3041 0.84 -0.5
122,592 - GFF3041 0.85 +0.6
122,661 + -0.3
122,661 + -0.6
122,662 - +1.2
122,662 - -0.1
122,662 - +0.9
122,711 + +0.2
122,712 - +0.5
122,712 - -0.2
123,198 + GFF3042 0.44 -1.3
123,246 + GFF3042 0.50 -0.2
123,247 - GFF3042 0.50 +0.8
123,327 + GFF3042 0.60 +1.1
123,327 + GFF3042 0.60 +0.1
123,327 + GFF3042 0.60 -0.1
123,327 + GFF3042 0.60 +0.4
123,328 - GFF3042 0.60 +0.3
123,328 - GFF3042 0.60 -0.5
123,328 - GFF3042 0.60 +0.1
123,367 - GFF3042 0.65 -0.2
123,645 - -0.7
123,685 + +2.6
123,686 - -0.3
123,686 - +0.4
123,686 - +1.1
123,688 - +0.5
123,688 - +0.4

Or see this region's nucleotide sequence