Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3003 and GFF3004 overlap by 4 nucleotides GFF3004 and GFF3005 overlap by 4 nucleotides GFF3005 and GFF3006 overlap by 4 nucleotides GFF3006 and GFF3007 are separated by 1 nucleotides
GFF3003 - Lysophospholipid acyltransferase, at 80,728 to 81,633
GFF3003
GFF3004 - FIG027190: Putative transmembrane protein, at 81,630 to 82,193
GFF3004
GFF3005 - FIG021862: membrane protein, exporter, at 82,190 to 84,529
GFF3005
GFF3006 - FIG00715393: hypothetical protein, at 84,526 to 85,164
GFF3006
GFF3007 - Polysaccharide deacetylase, at 85,166 to 85,972
GFF3007
Position (kb) 82
83
84
85 Strain fitness (log2 ratio) -1
0
1
2 at 81.449 kb on - strand, within GFF3003 at 81.449 kb on - strand, within GFF3003 at 81.553 kb on + strand at 81.592 kb on + strand at 81.592 kb on + strand at 81.592 kb on + strand at 82.011 kb on + strand, within GFF3004 at 82.011 kb on + strand, within GFF3004 at 82.011 kb on + strand, within GFF3004 at 82.011 kb on + strand, within GFF3004 at 82.011 kb on + strand, within GFF3004 at 82.011 kb on + strand, within GFF3004 at 82.011 kb on + strand, within GFF3004 at 82.012 kb on - strand, within GFF3004 at 82.012 kb on - strand, within GFF3004 at 82.012 kb on - strand, within GFF3004 at 82.140 kb on + strand at 82.141 kb on - strand at 82.141 kb on - strand at 82.523 kb on + strand, within GFF3005 at 82.524 kb on - strand, within GFF3005 at 82.637 kb on + strand, within GFF3005 at 82.637 kb on + strand, within GFF3005 at 82.638 kb on - strand, within GFF3005 at 82.988 kb on + strand, within GFF3005 at 83.144 kb on + strand, within GFF3005 at 83.144 kb on + strand, within GFF3005 at 83.145 kb on - strand, within GFF3005 at 83.145 kb on - strand, within GFF3005 at 83.145 kb on - strand, within GFF3005 at 83.147 kb on + strand, within GFF3005 at 83.148 kb on - strand, within GFF3005 at 83.148 kb on - strand, within GFF3005 at 83.195 kb on + strand, within GFF3005 at 83.195 kb on + strand, within GFF3005 at 83.196 kb on - strand, within GFF3005 at 83.196 kb on - strand, within GFF3005 at 83.196 kb on - strand, within GFF3005 at 83.291 kb on + strand, within GFF3005 at 83.292 kb on - strand, within GFF3005 at 83.333 kb on + strand, within GFF3005 at 83.334 kb on - strand, within GFF3005 at 83.334 kb on - strand, within GFF3005 at 83.471 kb on + strand, within GFF3005 at 83.472 kb on - strand, within GFF3005 at 83.472 kb on - strand, within GFF3005 at 83.595 kb on - strand, within GFF3005 at 83.699 kb on + strand, within GFF3005 at 84.086 kb on + strand, within GFF3005 at 84.087 kb on - strand, within GFF3005 at 84.096 kb on - strand, within GFF3005 at 84.096 kb on - strand, within GFF3005 at 84.312 kb on - strand at 84.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 81,449 - GFF3003 0.80 +1.1 81,449 - GFF3003 0.80 +0.4 81,553 + +0.2 81,592 + +0.3 81,592 + +0.5 81,592 + +0.1 82,011 + GFF3004 0.68 +0.1 82,011 + GFF3004 0.68 -0.2 82,011 + GFF3004 0.68 -0.9 82,011 + GFF3004 0.68 -0.2 82,011 + GFF3004 0.68 +0.3 82,011 + GFF3004 0.68 -0.4 82,011 + GFF3004 0.68 +0.8 82,012 - GFF3004 0.68 +0.7 82,012 - GFF3004 0.68 -0.0 82,012 - GFF3004 0.68 +0.1 82,140 + -0.9 82,141 - -1.5 82,141 - +0.1 82,523 + GFF3005 0.14 +1.5 82,524 - GFF3005 0.14 -0.4 82,637 + GFF3005 0.19 +0.1 82,637 + GFF3005 0.19 -0.6 82,638 - GFF3005 0.19 -0.6 82,988 + GFF3005 0.34 +0.1 83,144 + GFF3005 0.41 +0.1 83,144 + GFF3005 0.41 -0.3 83,145 - GFF3005 0.41 -0.3 83,145 - GFF3005 0.41 +1.2 83,145 - GFF3005 0.41 +1.8 83,147 + GFF3005 0.41 -0.0 83,148 - GFF3005 0.41 +0.1 83,148 - GFF3005 0.41 +0.2 83,195 + GFF3005 0.43 -0.1 83,195 + GFF3005 0.43 +1.1 83,196 - GFF3005 0.43 +1.4 83,196 - GFF3005 0.43 -0.1 83,196 - GFF3005 0.43 -0.1 83,291 + GFF3005 0.47 -0.3 83,292 - GFF3005 0.47 +0.1 83,333 + GFF3005 0.49 -0.3 83,334 - GFF3005 0.49 +0.2 83,334 - GFF3005 0.49 +0.0 83,471 + GFF3005 0.55 -0.3 83,472 - GFF3005 0.55 +1.1 83,472 - GFF3005 0.55 -0.4 83,595 - GFF3005 0.60 +1.9 83,699 + GFF3005 0.64 -0.2 84,086 + GFF3005 0.81 -1.3 84,087 - GFF3005 0.81 -1.4 84,096 - GFF3005 0.81 +0.0 84,096 - GFF3005 0.81 +0.1 84,312 - -0.5 84,312 - +0.2
Or see this region's nucleotide sequence