Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2960 and GFF2961 are separated by 95 nucleotides GFF2961 and GFF2962 overlap by 4 nucleotides GFF2962 and GFF2963 are separated by 16 nucleotides
GFF2960 - Gluconolactonase, at 38,997 to 39,923
GFF2960
GFF2961 - putative exported protein, at 40,019 to 40,996
GFF2961
GFF2962 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 40,993 to 41,898
GFF2962
GFF2963 - Dimethylmenaquinone methyltransferase family protein, at 41,915 to 42,625
GFF2963
Position (kb) 40
41 Strain fitness (log2 ratio) -2
-1
0
1
2 at 39.232 kb on - strand, within GFF2960 at 39.414 kb on + strand, within GFF2960 at 39.415 kb on - strand, within GFF2960 at 39.559 kb on - strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.636 kb on + strand, within GFF2960 at 39.637 kb on - strand, within GFF2960 at 39.760 kb on - strand, within GFF2960 at 39.807 kb on + strand, within GFF2960 at 39.808 kb on - strand, within GFF2960 at 39.834 kb on + strand at 39.834 kb on + strand at 39.834 kb on + strand at 39.834 kb on + strand at 39.900 kb on + strand at 39.900 kb on + strand at 39.901 kb on - strand at 39.901 kb on - strand at 39.901 kb on - strand at 39.901 kb on - strand at 39.917 kb on + strand at 39.917 kb on + strand at 39.917 kb on + strand at 39.917 kb on + strand at 39.918 kb on - strand at 39.918 kb on - strand at 39.918 kb on - strand at 40.145 kb on + strand, within GFF2961 at 40.181 kb on + strand, within GFF2961 at 40.181 kb on + strand, within GFF2961 at 41.270 kb on - strand, within GFF2962 at 41.270 kb on - strand, within GFF2962 at 41.389 kb on + strand, within GFF2962 at 41.425 kb on + strand, within GFF2962 at 41.425 kb on + strand, within GFF2962 at 41.426 kb on - strand, within GFF2962 at 41.426 kb on - strand, within GFF2962 at 41.426 kb on - strand, within GFF2962 at 41.641 kb on + strand, within GFF2962 at 41.642 kb on - strand, within GFF2962 at 41.746 kb on + strand, within GFF2962 at 41.878 kb on + strand at 41.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 39,232 - GFF2960 0.25 +0.1 39,414 + GFF2960 0.45 +1.1 39,415 - GFF2960 0.45 -0.4 39,559 - GFF2960 0.61 +0.1 39,636 + GFF2960 0.69 +2.4 39,636 + GFF2960 0.69 +0.1 39,636 + GFF2960 0.69 -0.0 39,636 + GFF2960 0.69 -0.5 39,636 + GFF2960 0.69 +0.5 39,636 + GFF2960 0.69 -0.5 39,636 + GFF2960 0.69 -0.5 39,637 - GFF2960 0.69 -0.1 39,760 - GFF2960 0.82 -0.3 39,807 + GFF2960 0.87 -0.5 39,808 - GFF2960 0.87 -1.2 39,834 + +0.1 39,834 + -0.9 39,834 + +0.6 39,834 + -0.1 39,900 + -0.5 39,900 + -0.1 39,901 - -2.4 39,901 - +0.4 39,901 - +1.8 39,901 - +1.1 39,917 + +1.1 39,917 + -0.9 39,917 + +0.8 39,917 + -0.4 39,918 - -0.5 39,918 - +0.6 39,918 - -0.2 40,145 + GFF2961 0.13 -0.0 40,181 + GFF2961 0.17 +0.6 40,181 + GFF2961 0.17 +0.6 41,270 - GFF2962 0.31 +0.2 41,270 - GFF2962 0.31 -0.3 41,389 + GFF2962 0.44 -0.4 41,425 + GFF2962 0.48 -0.1 41,425 + GFF2962 0.48 +1.1 41,426 - GFF2962 0.48 +0.3 41,426 - GFF2962 0.48 -0.1 41,426 - GFF2962 0.48 +0.6 41,641 + GFF2962 0.72 -0.4 41,642 - GFF2962 0.72 -0.5 41,746 + GFF2962 0.83 -0.5 41,878 + -0.2 41,879 - -1.1
Or see this region's nucleotide sequence