Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2918

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
5,617	+				+0.5
5,618	-				+0.8
5,618	-				-1.9
5,715	+				-0.1
5,715	+				+1.1
5,715	+				-0.4
5,715	+				-1.9
5,715	+				+1.8
5,715	+				-0.3
5,715	+				-0.4
5,715	+				-0.5
5,716	-				-1.1
5,716	-				+0.0
5,716	-				-0.5
5,716	-				+0.1
5,716	-				-1.2
6,069	+		GFF2919	0.79	-0.5
6,069	+		GFF2919	0.79	-1.7
6,070	-		GFF2919	0.79	-1.6
6,070	-		GFF2919	0.79	-0.6
6,073	-		GFF2919	0.79	-0.3
6,265	+				-0.6
6,265	+				-0.5
6,265	+				-0.7
6,265	+				-0.5
6,265	+				-1.5
6,266	-				-0.7
6,266	-				-0.6
6,292	+				-0.9
6,292	+				-0.9
6,292	+				-0.4
6,292	+				+0.1
6,292	+				-0.1
6,292	+				-0.2
6,292	+				-0.3
6,292	+				-1.6
6,292	+				-1.7
6,292	+				-0.5
6,292	+				-1.6
6,292	+				-1.5
6,292	+				-0.5
6,292	+				-0.8
6,292	+				-0.7
6,292	+				-0.7
6,292	+				+0.5
6,293	-				-0.2
6,293	-				-0.6
6,293	-				-0.4
6,293	-				+0.1
6,293	-				-1.2
6,293	-				-0.6
6,293	-				+0.7
6,293	-				-1.1
6,293	-				-0.4
6,293	-				-0.9
6,293	-				-1.3
6,293	-				-0.9
6,293	-				-0.9
6,293	-				-2.6
6,293	-				-1.4
6,293	-				-1.5
6,296	-		GFF2920	0.10	-1.3
6,296	-		GFF2920	0.10	-0.1
6,328	+		GFF2920	0.17	-0.5
6,328	+		GFF2920	0.17	+1.6
6,329	-		GFF2920	0.17	-1.1
6,382	+		GFF2920	0.29	-1.0
6,382	+		GFF2920	0.29	-1.1
6,382	+		GFF2920	0.29	+0.1
6,382	+		GFF2920	0.29	-1.8
6,383	-		GFF2920	0.29	-2.1
6,383	-		GFF2920	0.29	-0.9
6,505	+		GFF2920	0.54	-1.3
6,505	+		GFF2920	0.54	-1.3
6,505	+		GFF2920	0.54	+0.2
6,505	+		GFF2920	0.54	-0.6
6,505	+		GFF2920	0.54	+0.1
6,505	+		GFF2920	0.54	-0.4
6,505	+		GFF2920	0.54	-0.7
6,505	+		GFF2920	0.54	-1.9
6,505	+		GFF2920	0.54	-0.9
6,505	+		GFF2920	0.54	-0.9
6,506	-		GFF2920	0.55	-1.0
6,506	-		GFF2920	0.55	-1.9
6,506	-		GFF2920	0.55	+1.3
6,506	-		GFF2920	0.55	-0.7
6,506	-		GFF2920	0.55	-0.0
6,506	-		GFF2920	0.55	-1.0
6,506	-		GFF2920	0.55	-1.5
6,506	-		GFF2920	0.55	-0.6
6,506	-		GFF2920	0.55	-0.8
6,506	-		GFF2920	0.55	-1.3