Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2878 and GFF2879 overlap by 17 nucleotides GFF2879 and GFF2880 are separated by 148 nucleotides
GFF2878 - Two-component response regulator, at 466,090 to 467,001
GFF2878
GFF2879 - Two-component hybrid sensor and regulator, at 466,985 to 470,410
GFF2879
GFF2880 - Urea ABC transporter, urea binding protein, at 470,559 to 471,836
GFF2880
Position (kb) 466
467
468
469
470
471 Strain fitness (log2 ratio) -1
0
1
2 at 465.986 kb on - strand at 465.986 kb on - strand at 465.986 kb on - strand at 466.037 kb on + strand at 466.085 kb on + strand at 466.085 kb on + strand at 466.668 kb on - strand, within GFF2878 at 466.668 kb on - strand, within GFF2878 at 466.668 kb on - strand, within GFF2878 at 466.844 kb on + strand, within GFF2878 at 466.892 kb on + strand, within GFF2878 at 466.892 kb on + strand, within GFF2878 at 467.718 kb on + strand, within GFF2879 at 467.719 kb on - strand, within GFF2879 at 467.719 kb on - strand, within GFF2879 at 468.369 kb on + strand, within GFF2879 at 468.521 kb on + strand, within GFF2879 at 468.628 kb on - strand, within GFF2879 at 468.840 kb on + strand, within GFF2879 at 468.949 kb on - strand, within GFF2879 at 469.116 kb on + strand, within GFF2879 at 469.224 kb on + strand, within GFF2879 at 469.843 kb on - strand, within GFF2879 at 470.022 kb on + strand, within GFF2879 at 470.023 kb on - strand, within GFF2879 at 470.187 kb on + strand at 470.298 kb on + strand at 470.346 kb on + strand at 470.347 kb on - strand at 470.347 kb on - strand at 470.459 kb on - strand at 470.459 kb on - strand at 470.459 kb on - strand at 470.464 kb on - strand at 470.497 kb on + strand at 471.024 kb on + strand, within GFF2880 at 471.024 kb on + strand, within GFF2880 at 471.025 kb on - strand, within GFF2880 at 471.025 kb on - strand, within GFF2880 at 471.039 kb on + strand, within GFF2880 at 471.039 kb on + strand, within GFF2880 at 471.040 kb on - strand, within GFF2880 at 471.040 kb on - strand, within GFF2880 at 471.040 kb on - strand, within GFF2880 at 471.072 kb on + strand, within GFF2880 at 471.072 kb on + strand, within GFF2880 at 471.106 kb on - strand, within GFF2880 at 471.168 kb on + strand, within GFF2880 at 471.249 kb on + strand, within GFF2880 at 471.250 kb on - strand, within GFF2880 at 471.357 kb on + strand, within GFF2880
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 465,986 - -0.1 465,986 - -0.4 465,986 - +0.0 466,037 + +0.7 466,085 + +0.3 466,085 + -0.6 466,668 - GFF2878 0.63 +0.2 466,668 - GFF2878 0.63 +0.6 466,668 - GFF2878 0.63 +0.3 466,844 + GFF2878 0.83 -0.3 466,892 + GFF2878 0.88 -0.6 466,892 + GFF2878 0.88 -0.2 467,718 + GFF2879 0.21 -0.2 467,719 - GFF2879 0.21 +1.2 467,719 - GFF2879 0.21 -0.2 468,369 + GFF2879 0.40 -0.4 468,521 + GFF2879 0.45 -0.5 468,628 - GFF2879 0.48 -1.0 468,840 + GFF2879 0.54 -0.3 468,949 - GFF2879 0.57 -0.6 469,116 + GFF2879 0.62 +0.3 469,224 + GFF2879 0.65 +0.9 469,843 - GFF2879 0.83 +0.9 470,022 + GFF2879 0.89 +0.0 470,023 - GFF2879 0.89 +0.4 470,187 + +0.2 470,298 + +2.0 470,346 + +0.3 470,347 - +1.4 470,347 - -0.5 470,459 - +0.4 470,459 - +0.7 470,459 - +1.0 470,464 - +0.2 470,497 + -0.6 471,024 + GFF2880 0.36 -0.6 471,024 + GFF2880 0.36 +0.7 471,025 - GFF2880 0.36 +1.1 471,025 - GFF2880 0.36 +0.6 471,039 + GFF2880 0.38 +0.0 471,039 + GFF2880 0.38 -0.2 471,040 - GFF2880 0.38 -1.5 471,040 - GFF2880 0.38 +2.6 471,040 - GFF2880 0.38 -0.5 471,072 + GFF2880 0.40 -0.8 471,072 + GFF2880 0.40 +0.8 471,106 - GFF2880 0.43 -0.4 471,168 + GFF2880 0.48 -1.0 471,249 + GFF2880 0.54 +0.6 471,250 - GFF2880 0.54 -0.1 471,357 + GFF2880 0.62 +0.6
Or see this region's nucleotide sequence