Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2858 and GFF2859 overlap by 4 nucleotides GFF2859 and GFF2860 are separated by 139 nucleotides
GFF2858 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 446,197 to 447,147
GFF2858
GFF2859 - LysR-family transcriptional regulator, at 447,144 to 448,076
GFF2859
GFF2860 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 448,216 to 449,082
GFF2860
Position (kb) 447
448
449 Strain fitness (log2 ratio) -2
-1
0
1 at 446.389 kb on + strand, within GFF2858 at 446.390 kb on - strand, within GFF2858 at 446.559 kb on + strand, within GFF2858 at 446.767 kb on + strand, within GFF2858 at 446.768 kb on - strand, within GFF2858 at 446.893 kb on + strand, within GFF2858 at 446.893 kb on + strand, within GFF2858 at 446.893 kb on + strand, within GFF2858 at 446.894 kb on - strand, within GFF2858 at 447.031 kb on + strand, within GFF2858 at 447.031 kb on + strand, within GFF2858 at 447.146 kb on - strand at 447.367 kb on + strand, within GFF2859 at 447.367 kb on + strand, within GFF2859 at 447.826 kb on + strand, within GFF2859 at 448.033 kb on + strand at 448.034 kb on - strand at 448.077 kb on - strand at 448.115 kb on - strand at 448.117 kb on + strand at 448.117 kb on + strand at 448.118 kb on - strand at 448.118 kb on - strand at 448.118 kb on - strand at 448.118 kb on - strand at 448.128 kb on + strand at 448.289 kb on - strand at 448.901 kb on - strand, within GFF2860 at 448.987 kb on - strand, within GFF2860 at 449.011 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.021 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 446,389 + GFF2858 0.20 -0.4 446,390 - GFF2858 0.20 -0.3 446,559 + GFF2858 0.38 -0.1 446,767 + GFF2858 0.60 -2.0 446,768 - GFF2858 0.60 -0.8 446,893 + GFF2858 0.73 +0.4 446,893 + GFF2858 0.73 +0.2 446,893 + GFF2858 0.73 +0.6 446,894 - GFF2858 0.73 +0.2 447,031 + GFF2858 0.88 -0.3 447,031 + GFF2858 0.88 -1.4 447,146 - +1.0 447,367 + GFF2859 0.24 -0.1 447,367 + GFF2859 0.24 -0.3 447,826 + GFF2859 0.73 -1.0 448,033 + -1.6 448,034 - +0.1 448,077 - +0.6 448,115 - -1.0 448,117 + +0.3 448,117 + -0.2 448,118 - +0.7 448,118 - +0.2 448,118 - -0.3 448,118 - +0.1 448,128 + +0.0 448,289 - +0.0 448,901 - GFF2860 0.79 +0.0 448,987 - GFF2860 0.89 -0.1 449,011 + -0.3 449,020 + -0.3 449,020 + +0.6 449,020 + +0.3 449,020 + +0.0 449,020 + -0.4 449,021 - -0.2
Or see this region's nucleotide sequence