Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2845

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2844 and GFF2845 are separated by 6 nucleotidesGFF2845 and GFF2846 are separated by 66 nucleotides GFF2844 - LysR family transcriptional regulator PA2758, at 435,300 to 436,199 GFF2844 GFF2845 - hypothetical protein, at 436,206 to 436,409 GFF2845 GFF2846 - Transcriptional regulator, AraC family, at 436,476 to 437,441 GFF2846 Position (kb) 436 437Strain fitness (log2 ratio) -2 -1 0 1 2 3at 435.238 kb on + strandat 435.238 kb on + strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 436.011 kb on + strand, within GFF2844at 436.011 kb on + strand, within GFF2844at 436.403 kb on + strandat 436.443 kb on + strandat 436.443 kb on + strandat 436.443 kb on + strandat 436.443 kb on + strandat 436.443 kb on + strandat 436.444 kb on - strandat 436.511 kb on - strandat 436.511 kb on - strandat 436.529 kb on + strandat 436.531 kb on + strandat 436.532 kb on - strandat 436.532 kb on - strandat 436.532 kb on - strandat 436.532 kb on - strandat 436.648 kb on + strand, within GFF2846at 436.649 kb on - strand, within GFF2846at 436.649 kb on - strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.241 kb on + strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.359 kb on + strandat 437.359 kb on + strandat 437.359 kb on + strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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435,238 + +0.3
435,238 + -0.2
435,239 - -0.2
435,239 - +0.3
435,239 - -0.3
435,239 - -0.8
435,239 - +0.4
435,239 - -0.7
436,011 + GFF2844 0.79 +0.0
436,011 + GFF2844 0.79 -2.0
436,403 + -1.6
436,443 + -0.4
436,443 + +0.1
436,443 + +0.4
436,443 + -0.2
436,443 + -0.7
436,444 - -0.6
436,511 - -0.3
436,511 - +0.6
436,529 + -0.4
436,531 + -0.4
436,532 - -0.3
436,532 - -0.1
436,532 - -0.4
436,532 - -0.5
436,648 + GFF2846 0.18 +0.4
436,649 - GFF2846 0.18 -0.1
436,649 - GFF2846 0.18 +0.3
437,188 + GFF2846 0.74 -0.0
437,188 + GFF2846 0.74 +0.1
437,188 + GFF2846 0.74 -0.3
437,188 + GFF2846 0.74 -1.3
437,188 + GFF2846 0.74 +1.0
437,189 - GFF2846 0.74 -0.4
437,189 - GFF2846 0.74 +0.2
437,189 - GFF2846 0.74 -0.3
437,189 - GFF2846 0.74 +0.2
437,189 - GFF2846 0.74 -0.2
437,189 - GFF2846 0.74 +0.0
437,194 + GFF2846 0.74 -0.4
437,194 + GFF2846 0.74 -0.1
437,194 + GFF2846 0.74 +0.4
437,194 + GFF2846 0.74 -0.2
437,194 + GFF2846 0.74 +0.4
437,194 + GFF2846 0.74 +0.5
437,194 + GFF2846 0.74 -0.8
437,194 + GFF2846 0.74 +0.2
437,194 + GFF2846 0.74 +0.2
437,194 + GFF2846 0.74 +1.0
437,195 - GFF2846 0.74 -1.3
437,195 - GFF2846 0.74 +0.2
437,195 - GFF2846 0.74 +3.0
437,195 - GFF2846 0.74 +0.3
437,195 - GFF2846 0.74 -0.1
437,195 - GFF2846 0.74 -0.8
437,195 - GFF2846 0.74 -0.0
437,195 - GFF2846 0.74 +0.7
437,195 - GFF2846 0.74 -2.1
437,195 - GFF2846 0.74 -1.0
437,195 - GFF2846 0.74 +0.0
437,195 - GFF2846 0.74 -0.3
437,195 - GFF2846 0.74 +0.3
437,195 - GFF2846 0.74 -1.5
437,197 + GFF2846 0.75 -0.2
437,197 + GFF2846 0.75 -0.8
437,197 + GFF2846 0.75 +0.1
437,197 + GFF2846 0.75 -0.1
437,197 + GFF2846 0.75 +0.3
437,197 + GFF2846 0.75 +0.5
437,197 + GFF2846 0.75 -0.5
437,197 + GFF2846 0.75 -0.6
437,198 - GFF2846 0.75 -0.0
437,198 - GFF2846 0.75 +0.0
437,198 - GFF2846 0.75 +0.0
437,198 - GFF2846 0.75 +0.2
437,198 - GFF2846 0.75 -0.4
437,198 - GFF2846 0.75 -0.1
437,198 - GFF2846 0.75 +0.0
437,198 - GFF2846 0.75 +1.0
437,241 + GFF2846 0.79 +0.3
437,242 - GFF2846 0.79 -0.8
437,242 - GFF2846 0.79 +1.3
437,242 - GFF2846 0.79 +1.0
437,242 - GFF2846 0.79 -0.3
437,242 - GFF2846 0.79 -0.3
437,242 - GFF2846 0.79 -0.5
437,359 + -1.0
437,359 + +0.6
437,359 + -1.1
437,360 - +1.2
437,360 - +0.1
437,360 - -0.4
437,360 - -1.8
437,360 - -0.3
437,360 - -1.1

Or see this region's nucleotide sequence