Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2775 and GFF2776 are separated by 181 nucleotides GFF2776 and GFF2777 are separated by 55 nucleotides
GFF2775 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 374,501 to 376,189
GFF2775
GFF2776 - Transcriptional regulator, IclR family, at 376,371 to 377,198
GFF2776
GFF2777 - Fructose-bisphosphate aldolase class II (EC 4.1.2.13), at 377,254 to 378,318
GFF2777
Position (kb) 376
377
378 Strain fitness (log2 ratio) -2
-1
0
1
2 at 375.393 kb on + strand, within GFF2775 at 375.393 kb on + strand, within GFF2775 at 375.393 kb on + strand, within GFF2775 at 375.393 kb on + strand, within GFF2775 at 375.394 kb on - strand, within GFF2775 at 375.394 kb on - strand, within GFF2775 at 375.567 kb on + strand, within GFF2775 at 375.568 kb on - strand, within GFF2775 at 375.568 kb on - strand, within GFF2775 at 375.735 kb on + strand, within GFF2775 at 375.735 kb on + strand, within GFF2775 at 375.735 kb on + strand, within GFF2775 at 375.735 kb on - strand, within GFF2775 at 375.736 kb on - strand, within GFF2775 at 375.736 kb on - strand, within GFF2775 at 375.736 kb on - strand, within GFF2775 at 375.736 kb on - strand, within GFF2775 at 375.921 kb on + strand, within GFF2775 at 375.922 kb on - strand, within GFF2775 at 375.922 kb on - strand, within GFF2775 at 375.922 kb on - strand, within GFF2775 at 376.044 kb on + strand at 376.062 kb on + strand at 376.062 kb on + strand at 376.062 kb on + strand at 376.063 kb on - strand at 376.063 kb on - strand at 376.233 kb on + strand at 376.233 kb on + strand at 376.233 kb on + strand at 376.233 kb on + strand at 376.234 kb on - strand at 376.234 kb on - strand at 376.235 kb on + strand at 376.235 kb on + strand at 376.236 kb on - strand at 376.236 kb on - strand at 376.258 kb on - strand at 376.326 kb on + strand at 376.764 kb on + strand, within GFF2776 at 376.764 kb on + strand, within GFF2776 at 376.764 kb on + strand, within GFF2776 at 376.764 kb on + strand, within GFF2776 at 376.765 kb on - strand, within GFF2776 at 376.765 kb on - strand, within GFF2776 at 376.765 kb on - strand, within GFF2776 at 376.765 kb on - strand, within GFF2776 at 376.765 kb on - strand, within GFF2776 at 376.765 kb on - strand, within GFF2776 at 376.765 kb on - strand, within GFF2776 at 376.986 kb on + strand, within GFF2776 at 377.289 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 375,393 + GFF2775 0.53 -0.3 375,393 + GFF2775 0.53 -0.4 375,393 + GFF2775 0.53 -1.4 375,393 + GFF2775 0.53 +0.2 375,394 - GFF2775 0.53 -2.4 375,394 - GFF2775 0.53 +0.2 375,567 + GFF2775 0.63 -0.0 375,568 - GFF2775 0.63 -1.6 375,568 - GFF2775 0.63 -1.1 375,735 + GFF2775 0.73 +1.0 375,735 + GFF2775 0.73 +0.1 375,735 + GFF2775 0.73 -0.2 375,735 - GFF2775 0.73 -1.3 375,736 - GFF2775 0.73 -0.2 375,736 - GFF2775 0.73 -1.3 375,736 - GFF2775 0.73 -0.2 375,736 - GFF2775 0.73 +0.3 375,921 + GFF2775 0.84 +2.6 375,922 - GFF2775 0.84 +1.0 375,922 - GFF2775 0.84 +0.3 375,922 - GFF2775 0.84 +1.0 376,044 + -0.9 376,062 + -0.2 376,062 + -0.2 376,062 + +0.4 376,063 - -1.4 376,063 - -0.5 376,233 + +0.6 376,233 + -0.2 376,233 + +1.0 376,233 + +1.3 376,234 - +1.0 376,234 - +0.1 376,235 + +0.4 376,235 + -0.3 376,236 - +0.4 376,236 - -0.2 376,258 - +0.5 376,326 + +0.4 376,764 + GFF2776 0.47 +0.2 376,764 + GFF2776 0.47 -0.5 376,764 + GFF2776 0.47 -0.4 376,764 + GFF2776 0.47 -0.4 376,765 - GFF2776 0.48 -1.1 376,765 - GFF2776 0.48 -0.4 376,765 - GFF2776 0.48 -0.2 376,765 - GFF2776 0.48 -0.3 376,765 - GFF2776 0.48 -0.2 376,765 - GFF2776 0.48 +0.3 376,765 - GFF2776 0.48 -0.2 376,986 + GFF2776 0.74 -0.2 377,289 - +0.2
Or see this region's nucleotide sequence