Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2681 and GFF2682 are separated by 193 nucleotides GFF2682 and GFF2683 are separated by 512 nucleotides GFF2683 and GFF2684 are separated by 152 nucleotides
GFF2681 - Sulfate permease family protein, at 271,054 to 272,724
GFF2681
GFF2682 - hypothetical protein, at 272,918 to 274,432
GFF2682
GFF2683 - hypothetical protein, at 274,945 to 275,103
GFF2683
GFF2684 - hypothetical protein, at 275,256 to 275,990
GFF2684
Position (kb) 272
273
274
275 Strain fitness (log2 ratio) -1
0
1
2 at 272.027 kb on + strand, within GFF2681 at 272.027 kb on + strand, within GFF2681 at 272.096 kb on + strand, within GFF2681 at 272.096 kb on + strand, within GFF2681 at 272.096 kb on + strand, within GFF2681 at 272.097 kb on - strand, within GFF2681 at 272.097 kb on - strand, within GFF2681 at 272.097 kb on - strand, within GFF2681 at 272.559 kb on - strand at 272.559 kb on - strand at 272.559 kb on - strand at 272.559 kb on - strand at 272.701 kb on + strand at 272.737 kb on - strand at 272.955 kb on - strand at 273.102 kb on + strand, within GFF2682 at 273.134 kb on + strand, within GFF2682 at 273.135 kb on - strand, within GFF2682 at 273.151 kb on + strand, within GFF2682 at 273.151 kb on + strand, within GFF2682 at 273.151 kb on + strand, within GFF2682 at 273.151 kb on + strand, within GFF2682 at 273.152 kb on - strand, within GFF2682 at 273.152 kb on - strand, within GFF2682 at 273.152 kb on - strand, within GFF2682 at 273.152 kb on - strand, within GFF2682 at 273.152 kb on - strand, within GFF2682 at 273.152 kb on - strand, within GFF2682 at 273.164 kb on + strand, within GFF2682 at 273.229 kb on + strand, within GFF2682 at 273.230 kb on - strand, within GFF2682 at 273.311 kb on + strand, within GFF2682 at 273.311 kb on + strand, within GFF2682 at 273.312 kb on - strand, within GFF2682 at 273.386 kb on - strand, within GFF2682 at 273.387 kb on + strand, within GFF2682 at 273.387 kb on + strand, within GFF2682 at 273.387 kb on + strand, within GFF2682 at 273.387 kb on + strand, within GFF2682 at 273.387 kb on + strand, within GFF2682 at 273.387 kb on - strand, within GFF2682 at 273.388 kb on - strand, within GFF2682 at 273.388 kb on - strand, within GFF2682 at 273.457 kb on + strand, within GFF2682 at 273.520 kb on + strand, within GFF2682 at 273.520 kb on + strand, within GFF2682 at 274.202 kb on + strand, within GFF2682 at 274.269 kb on - strand, within GFF2682 at 274.269 kb on - strand, within GFF2682 at 274.274 kb on + strand, within GFF2682 at 274.275 kb on - strand, within GFF2682 at 274.275 kb on - strand, within GFF2682 at 274.283 kb on - strand at 274.364 kb on + strand at 274.364 kb on + strand at 274.365 kb on - strand at 274.365 kb on - strand at 274.365 kb on - strand at 274.365 kb on - strand at 274.397 kb on + strand at 274.398 kb on - strand at 274.398 kb on - strand at 274.973 kb on - strand, within GFF2683 at 275.036 kb on + strand, within GFF2683 at 275.219 kb on - strand at 275.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 272,027 + GFF2681 0.58 +0.3 272,027 + GFF2681 0.58 -0.3 272,096 + GFF2681 0.62 -0.5 272,096 + GFF2681 0.62 +0.3 272,096 + GFF2681 0.62 +0.1 272,097 - GFF2681 0.62 +0.4 272,097 - GFF2681 0.62 -1.2 272,097 - GFF2681 0.62 +0.3 272,559 - -0.3 272,559 - +0.2 272,559 - +0.3 272,559 - -0.0 272,701 + +1.6 272,737 - +0.2 272,955 - +0.2 273,102 + GFF2682 0.12 -0.2 273,134 + GFF2682 0.14 -1.0 273,135 - GFF2682 0.14 +0.8 273,151 + GFF2682 0.15 +0.0 273,151 + GFF2682 0.15 +0.3 273,151 + GFF2682 0.15 -0.6 273,151 + GFF2682 0.15 -0.8 273,152 - GFF2682 0.15 -0.3 273,152 - GFF2682 0.15 -1.6 273,152 - GFF2682 0.15 -0.7 273,152 - GFF2682 0.15 -0.8 273,152 - GFF2682 0.15 +0.3 273,152 - GFF2682 0.15 -0.2 273,164 + GFF2682 0.16 +0.4 273,229 + GFF2682 0.21 +0.3 273,230 - GFF2682 0.21 -0.8 273,311 + GFF2682 0.26 +0.8 273,311 + GFF2682 0.26 +0.0 273,312 - GFF2682 0.26 -0.4 273,386 - GFF2682 0.31 +1.0 273,387 + GFF2682 0.31 -0.6 273,387 + GFF2682 0.31 -0.8 273,387 + GFF2682 0.31 -0.1 273,387 + GFF2682 0.31 +1.0 273,387 + GFF2682 0.31 +0.1 273,387 - GFF2682 0.31 +0.4 273,388 - GFF2682 0.31 -0.3 273,388 - GFF2682 0.31 -1.2 273,457 + GFF2682 0.36 +0.8 273,520 + GFF2682 0.40 -0.4 273,520 + GFF2682 0.40 -0.9 274,202 + GFF2682 0.85 +0.4 274,269 - GFF2682 0.89 -0.7 274,269 - GFF2682 0.89 +0.8 274,274 + GFF2682 0.90 +2.3 274,275 - GFF2682 0.90 -1.0 274,275 - GFF2682 0.90 +0.2 274,283 - -1.6 274,364 + -0.5 274,364 + +1.0 274,365 - -0.4 274,365 - -0.2 274,365 - +0.7 274,365 - -0.6 274,397 + -1.1 274,398 - -0.1 274,398 - -0.3 274,973 - GFF2683 0.18 +0.0 275,036 + GFF2683 0.57 +0.4 275,219 - +0.4 275,219 - +0.2
Or see this region's nucleotide sequence