Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2573 and GFF2574 overlap by 1 nucleotides GFF2574 and GFF2575 overlap by 1 nucleotides GFF2575 and GFF2576 overlap by 8 nucleotides GFF2576 and GFF2577 are separated by 24 nucleotides
GFF2573 - Peptide deformylase (EC 3.5.1.88), at 165,562 to 166,083
GFF2573
GFF2574 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 166,083 to 167,063
GFF2574
GFF2575 - Branched-chain amino acid transport protein AzlC, at 167,063 to 167,806
GFF2575
GFF2576 - Probable transmembrane protein, at 167,799 to 168,134
GFF2576
GFF2577 - Phosphoglycerol transferase I (EC 2.7.8.20), at 168,159 to 170,732
GFF2577
Position (kb) 167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 166.293 kb on + strand, within GFF2574 at 166.294 kb on - strand, within GFF2574 at 166.365 kb on + strand, within GFF2574 at 166.365 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.704 kb on + strand, within GFF2574 at 166.705 kb on - strand, within GFF2574 at 166.705 kb on - strand, within GFF2574 at 166.705 kb on - strand, within GFF2574 at 166.705 kb on - strand, within GFF2574 at 166.705 kb on - strand, within GFF2574 at 166.705 kb on - strand, within GFF2574 at 167.099 kb on + strand at 167.100 kb on - strand at 167.100 kb on - strand at 167.355 kb on - strand, within GFF2575 at 167.355 kb on - strand, within GFF2575 at 167.355 kb on - strand, within GFF2575 at 167.355 kb on - strand, within GFF2575 at 167.355 kb on - strand, within GFF2575 at 167.396 kb on + strand, within GFF2575 at 167.396 kb on + strand, within GFF2575 at 167.396 kb on + strand, within GFF2575 at 167.397 kb on - strand, within GFF2575 at 167.397 kb on - strand, within GFF2575 at 167.417 kb on + strand, within GFF2575 at 167.417 kb on + strand, within GFF2575 at 167.417 kb on + strand, within GFF2575 at 167.417 kb on + strand, within GFF2575 at 167.417 kb on + strand, within GFF2575 at 167.417 kb on + strand, within GFF2575 at 167.417 kb on + strand, within GFF2575 at 167.418 kb on - strand, within GFF2575 at 167.418 kb on - strand, within GFF2575 at 167.418 kb on - strand, within GFF2575 at 167.486 kb on + strand, within GFF2575 at 167.486 kb on + strand, within GFF2575 at 167.487 kb on - strand, within GFF2575 at 167.487 kb on - strand, within GFF2575 at 167.487 kb on - strand, within GFF2575 at 167.513 kb on + strand, within GFF2575 at 167.513 kb on + strand, within GFF2575 at 167.513 kb on + strand, within GFF2575 at 167.513 kb on + strand, within GFF2575 at 167.514 kb on - strand, within GFF2575 at 167.514 kb on - strand, within GFF2575 at 167.514 kb on - strand, within GFF2575 at 167.514 kb on - strand, within GFF2575 at 167.514 kb on - strand, within GFF2575 at 167.514 kb on - strand, within GFF2575 at 167.514 kb on - strand, within GFF2575 at 167.546 kb on - strand, within GFF2575 at 167.932 kb on - strand, within GFF2576 at 168.102 kb on + strand at 168.103 kb on - strand at 168.181 kb on + strand at 168.182 kb on - strand at 168.197 kb on - strand at 168.271 kb on + strand at 168.272 kb on - strand at 168.272 kb on - strand at 168.272 kb on - strand at 168.272 kb on - strand at 168.331 kb on + strand at 168.331 kb on + strand at 168.331 kb on + strand at 168.332 kb on - strand at 168.332 kb on - strand at 168.568 kb on + strand, within GFF2577 at 168.568 kb on + strand, within GFF2577 at 168.620 kb on - strand, within GFF2577 at 168.670 kb on + strand, within GFF2577 at 168.670 kb on + strand, within GFF2577 at 168.671 kb on - strand, within GFF2577
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 166,293 + GFF2574 0.21 -1.3 166,294 - GFF2574 0.22 -1.7 166,365 + GFF2574 0.29 -1.5 166,365 + GFF2574 0.29 -1.8 166,704 + GFF2574 0.63 -2.5 166,704 + GFF2574 0.63 -2.1 166,704 + GFF2574 0.63 -2.0 166,704 + GFF2574 0.63 -2.7 166,704 + GFF2574 0.63 -2.0 166,704 + GFF2574 0.63 -3.7 166,704 + GFF2574 0.63 -2.1 166,705 - GFF2574 0.63 -2.3 166,705 - GFF2574 0.63 -3.0 166,705 - GFF2574 0.63 -1.3 166,705 - GFF2574 0.63 -1.8 166,705 - GFF2574 0.63 -1.8 166,705 - GFF2574 0.63 -2.9 167,099 + -0.7 167,100 - -1.2 167,100 - -1.0 167,355 - GFF2575 0.39 -0.4 167,355 - GFF2575 0.39 -0.9 167,355 - GFF2575 0.39 -0.1 167,355 - GFF2575 0.39 -0.7 167,355 - GFF2575 0.39 -0.6 167,396 + GFF2575 0.45 +0.0 167,396 + GFF2575 0.45 +0.0 167,396 + GFF2575 0.45 -0.9 167,397 - GFF2575 0.45 -0.1 167,397 - GFF2575 0.45 -0.6 167,417 + GFF2575 0.48 -0.3 167,417 + GFF2575 0.48 -0.9 167,417 + GFF2575 0.48 -1.1 167,417 + GFF2575 0.48 +0.0 167,417 + GFF2575 0.48 -0.5 167,417 + GFF2575 0.48 -0.6 167,417 + GFF2575 0.48 -0.4 167,418 - GFF2575 0.48 -0.3 167,418 - GFF2575 0.48 -0.0 167,418 - GFF2575 0.48 -0.1 167,486 + GFF2575 0.57 -0.6 167,486 + GFF2575 0.57 -0.7 167,487 - GFF2575 0.57 -2.7 167,487 - GFF2575 0.57 -0.4 167,487 - GFF2575 0.57 -0.6 167,513 + GFF2575 0.60 -0.5 167,513 + GFF2575 0.60 -0.5 167,513 + GFF2575 0.60 -0.5 167,513 + GFF2575 0.60 -0.4 167,514 - GFF2575 0.61 +0.2 167,514 - GFF2575 0.61 +0.5 167,514 - GFF2575 0.61 -1.9 167,514 - GFF2575 0.61 -0.4 167,514 - GFF2575 0.61 -1.5 167,514 - GFF2575 0.61 -0.3 167,514 - GFF2575 0.61 -1.7 167,546 - GFF2575 0.65 -0.4 167,932 - GFF2576 0.40 +0.3 168,102 + -1.4 168,103 - -0.3 168,181 + -1.4 168,182 - +0.9 168,197 - +0.1 168,271 + -0.2 168,272 - -0.2 168,272 - -0.1 168,272 - -0.5 168,272 - +0.1 168,331 + +0.3 168,331 + +0.7 168,331 + +1.6 168,332 - -0.1 168,332 - -1.1 168,568 + GFF2577 0.16 -0.5 168,568 + GFF2577 0.16 -0.4 168,620 - GFF2577 0.18 -0.2 168,670 + GFF2577 0.20 +0.1 168,670 + GFF2577 0.20 -0.3 168,671 - GFF2577 0.20 +0.1
Or see this region's nucleotide sequence