Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2491

Experiment: Ying_Others16 rep A; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2490 and GFF2491 are separated by 220 nucleotidesGFF2491 and GFF2492 are separated by 12 nucleotidesGFF2492 and GFF2493 overlap by 7 nucleotides GFF2490 - Hydrolases of the alpha/beta superfamily, at 75,027 to 75,923 GFF2490 GFF2491 - Extracellular protease precursor (EC 3.4.21.-), at 76,144 to 77,961 GFF2491 GFF2492 - hypothetical protein, at 77,974 to 78,717 GFF2492 GFF2493 - Biotin--protein ligase (EC 6.3.4.9, EC 6.3.4.10, EC 6.3.4.11, EC 6.3.4.15), at 78,711 to 79,514 GFF2493 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1 2at 75.174 kb on + strand, within GFF2490at 75.174 kb on + strand, within GFF2490at 75.174 kb on + strand, within GFF2490at 75.175 kb on - strand, within GFF2490at 75.175 kb on - strand, within GFF2490at 75.232 kb on - strand, within GFF2490at 75.285 kb on + strand, within GFF2490at 75.285 kb on + strand, within GFF2490at 75.285 kb on + strand, within GFF2490at 75.286 kb on - strand, within GFF2490at 75.286 kb on - strand, within GFF2490at 75.355 kb on - strand, within GFF2490at 75.355 kb on - strand, within GFF2490at 75.372 kb on + strand, within GFF2490at 75.372 kb on + strand, within GFF2490at 75.373 kb on - strand, within GFF2490at 75.426 kb on + strand, within GFF2490at 75.426 kb on + strand, within GFF2490at 75.426 kb on + strand, within GFF2490at 75.426 kb on + strand, within GFF2490at 75.426 kb on + strand, within GFF2490at 75.426 kb on + strand, within GFF2490at 75.426 kb on + strand, within GFF2490at 75.427 kb on - strand, within GFF2490at 75.427 kb on - strand, within GFF2490at 75.427 kb on - strand, within GFF2490at 75.427 kb on - strand, within GFF2490at 75.427 kb on - strand, within GFF2490at 75.427 kb on - strand, within GFF2490at 75.427 kb on - strand, within GFF2490at 75.589 kb on - strand, within GFF2490at 75.624 kb on + strand, within GFF2490at 75.624 kb on + strand, within GFF2490at 75.625 kb on - strand, within GFF2490at 75.625 kb on - strand, within GFF2490at 75.831 kb on + strand, within GFF2490at 75.832 kb on - strand, within GFF2490at 75.936 kb on + strandat 75.936 kb on + strandat 75.936 kb on + strandat 75.936 kb on + strandat 75.936 kb on + strandat 75.936 kb on + strandat 75.936 kb on + strandat 75.936 kb on + strandat 75.936 kb on + strandat 75.936 kb on + strandat 75.937 kb on - strandat 75.937 kb on - strandat 75.937 kb on - strandat 75.937 kb on - strandat 75.937 kb on - strandat 75.937 kb on - strandat 75.970 kb on + strandat 75.970 kb on + strandat 75.970 kb on + strandat 75.971 kb on - strandat 75.971 kb on - strandat 75.971 kb on - strandat 76.678 kb on + strand, within GFF2491at 76.678 kb on + strand, within GFF2491at 76.678 kb on + strand, within GFF2491at 77.065 kb on + strand, within GFF2491at 77.065 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.213 kb on - strand, within GFF2491at 77.213 kb on - strand, within GFF2491at 77.213 kb on - strand, within GFF2491at 77.213 kb on - strand, within GFF2491at 77.287 kb on + strand, within GFF2491at 77.332 kb on + strand, within GFF2491at 77.332 kb on + strand, within GFF2491at 77.332 kb on + strand, within GFF2491at 77.332 kb on + strand, within GFF2491at 77.332 kb on + strand, within GFF2491at 77.332 kb on + strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.338 kb on + strand, within GFF2491at 77.338 kb on + strand, within GFF2491at 77.339 kb on - strand, within GFF2491at 77.339 kb on - strand, within GFF2491at 77.339 kb on - strand, within GFF2491at 77.339 kb on - strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 78.071 kb on + strand, within GFF2492at 78.072 kb on - strand, within GFF2492at 78.072 kb on - strand, within GFF2492at 78.170 kb on + strand, within GFF2492at 78.170 kb on + strand, within GFF2492at 78.170 kb on + strand, within GFF2492at 78.170 kb on + strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.650 kb on + strandat 78.650 kb on - strandat 78.671 kb on + strandat 78.671 kb on + strandat 78.671 kb on + strandat 78.671 kb on + strandat 78.672 kb on - strandat 78.672 kb on - strandat 78.672 kb on - strandat 78.672 kb on - strandat 78.672 kb on - strandat 78.672 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
remove
75,174 + GFF2490 0.16 +1.0
75,174 + GFF2490 0.16 -0.2
75,174 + GFF2490 0.16 -0.4
75,175 - GFF2490 0.16 -0.7
75,175 - GFF2490 0.16 +0.9
75,232 - GFF2490 0.23 +1.6
75,285 + GFF2490 0.29 -0.3
75,285 + GFF2490 0.29 +0.2
75,285 + GFF2490 0.29 -0.1
75,286 - GFF2490 0.29 +0.0
75,286 - GFF2490 0.29 +0.6
75,355 - GFF2490 0.37 -1.0
75,355 - GFF2490 0.37 +1.3
75,372 + GFF2490 0.38 -2.3
75,372 + GFF2490 0.38 -0.3
75,373 - GFF2490 0.39 -0.1
75,426 + GFF2490 0.44 +0.0
75,426 + GFF2490 0.44 -0.2
75,426 + GFF2490 0.44 +1.0
75,426 + GFF2490 0.44 +0.6
75,426 + GFF2490 0.44 -1.0
75,426 + GFF2490 0.44 -0.4
75,426 + GFF2490 0.44 +0.0
75,427 - GFF2490 0.45 -0.1
75,427 - GFF2490 0.45 -0.1
75,427 - GFF2490 0.45 -0.2
75,427 - GFF2490 0.45 +1.3
75,427 - GFF2490 0.45 -0.2
75,427 - GFF2490 0.45 +1.0
75,427 - GFF2490 0.45 +0.6
75,589 - GFF2490 0.63 -0.4
75,624 + GFF2490 0.67 -0.4
75,624 + GFF2490 0.67 -0.1
75,625 - GFF2490 0.67 -0.3
75,625 - GFF2490 0.67 -0.1
75,831 + GFF2490 0.90 -0.7
75,832 - GFF2490 0.90 -0.0
75,936 + -0.1
75,936 + -0.5
75,936 + -0.2
75,936 + -0.5
75,936 + +0.2
75,936 + +0.3
75,936 + +0.1
75,936 + -0.5
75,936 + +0.2
75,936 + +2.0
75,937 - +0.4
75,937 - -0.8
75,937 - +0.7
75,937 - +0.3
75,937 - +0.2
75,937 - +0.2
75,970 + -0.3
75,970 + +0.0
75,970 + -0.1
75,971 - +0.5
75,971 - +0.0
75,971 - +0.6
76,678 + GFF2491 0.29 +0.7
76,678 + GFF2491 0.29 -0.5
76,678 + GFF2491 0.29 -0.3
77,065 + GFF2491 0.51 +0.2
77,065 + GFF2491 0.51 +0.5
77,212 + GFF2491 0.59 +0.5
77,212 + GFF2491 0.59 +0.5
77,212 + GFF2491 0.59 +0.1
77,212 + GFF2491 0.59 -0.1
77,212 + GFF2491 0.59 +0.2
77,212 + GFF2491 0.59 -0.4
77,212 + GFF2491 0.59 -0.5
77,213 - GFF2491 0.59 +0.0
77,213 - GFF2491 0.59 -0.1
77,213 - GFF2491 0.59 -0.1
77,213 - GFF2491 0.59 -0.0
77,287 + GFF2491 0.63 -0.1
77,332 + GFF2491 0.65 -0.0
77,332 + GFF2491 0.65 +0.0
77,332 + GFF2491 0.65 -0.3
77,332 + GFF2491 0.65 +0.9
77,332 + GFF2491 0.65 -0.2
77,332 + GFF2491 0.65 -0.0
77,333 - GFF2491 0.65 +1.5
77,333 - GFF2491 0.65 -0.4
77,333 - GFF2491 0.65 -0.2
77,333 - GFF2491 0.65 -1.0
77,333 - GFF2491 0.65 +0.3
77,333 - GFF2491 0.65 +0.9
77,333 - GFF2491 0.65 -0.2
77,333 - GFF2491 0.65 +0.4
77,333 - GFF2491 0.65 -0.8
77,333 - GFF2491 0.65 +0.3
77,333 - GFF2491 0.65 -0.2
77,333 - GFF2491 0.65 +0.6
77,333 - GFF2491 0.65 -0.1
77,338 + GFF2491 0.66 -0.3
77,338 + GFF2491 0.66 -0.5
77,339 - GFF2491 0.66 +0.5
77,339 - GFF2491 0.66 +0.5
77,339 - GFF2491 0.66 -0.3
77,339 - GFF2491 0.66 +0.3
77,773 + GFF2491 0.90 +0.8
77,773 + GFF2491 0.90 -0.4
77,773 + GFF2491 0.90 -0.2
77,773 + GFF2491 0.90 -0.6
77,773 + GFF2491 0.90 +1.2
77,773 + GFF2491 0.90 +0.5
77,773 + GFF2491 0.90 -0.5
77,773 + GFF2491 0.90 -0.9
77,773 + GFF2491 0.90 -0.3
77,773 + GFF2491 0.90 +0.2
77,773 + GFF2491 0.90 +0.1
77,773 + GFF2491 0.90 -0.6
77,773 + GFF2491 0.90 -1.4
77,773 + GFF2491 0.90 -0.4
77,773 + GFF2491 0.90 -0.1
77,773 + GFF2491 0.90 +0.0
77,773 + GFF2491 0.90 +0.4
77,774 - GFF2491 0.90 -1.0
77,774 - GFF2491 0.90 +0.6
77,774 - GFF2491 0.90 +2.0
77,774 - GFF2491 0.90 -0.2
77,774 - GFF2491 0.90 +0.3
77,774 - GFF2491 0.90 -1.5
77,774 - GFF2491 0.90 +0.2
77,774 - GFF2491 0.90 -1.0
77,774 - GFF2491 0.90 +0.3
77,774 - GFF2491 0.90 -0.1
77,774 - GFF2491 0.90 +0.0
77,774 - GFF2491 0.90 +0.1
77,774 - GFF2491 0.90 +0.4
77,774 - GFF2491 0.90 +0.2
77,774 - GFF2491 0.90 -0.9
77,774 - GFF2491 0.90 +0.3
77,774 - GFF2491 0.90 -0.3
78,071 + GFF2492 0.13 -0.3
78,072 - GFF2492 0.13 -0.5
78,072 - GFF2492 0.13 -0.4
78,170 + GFF2492 0.26 -0.3
78,170 + GFF2492 0.26 +0.0
78,170 + GFF2492 0.26 +0.2
78,170 + GFF2492 0.26 -0.5
78,171 - GFF2492 0.26 +0.5
78,171 - GFF2492 0.26 +0.5
78,171 - GFF2492 0.26 +0.6
78,171 - GFF2492 0.26 -0.2
78,171 - GFF2492 0.26 -0.3
78,293 + GFF2492 0.43 +0.2
78,293 + GFF2492 0.43 -0.3
78,293 + GFF2492 0.43 -1.1
78,293 + GFF2492 0.43 -0.0
78,293 + GFF2492 0.43 -0.7
78,293 + GFF2492 0.43 -1.5
78,294 - GFF2492 0.43 -0.4
78,294 - GFF2492 0.43 -1.8
78,294 - GFF2492 0.43 +0.5
78,294 - GFF2492 0.43 -0.6
78,294 - GFF2492 0.43 -0.2
78,294 - GFF2492 0.43 -0.1
78,294 - GFF2492 0.43 +0.0
78,294 - GFF2492 0.43 +0.3
78,650 + +0.0
78,650 - +1.0
78,671 + +0.2
78,671 + -0.3
78,671 + +1.0
78,671 + -0.4
78,672 - -0.6
78,672 - +0.9
78,672 - +0.5
78,672 - +0.2
78,672 - +0.1
78,672 - +0.1

Or see this region's nucleotide sequence