Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2467 and GFF2468 are separated by 54 nucleotides GFF2468 and GFF2469 are separated by 295 nucleotides GFF2469 and GFF2470 are separated by 226 nucleotides GFF2470 and GFF2471 are separated by 205 nucleotides
GFF2467 - Histone acetyltransferase HPA2 and related acetyltransferases, at 50,591 to 51,133
GFF2467
GFF2468 - Guanine-specific ribonuclease N1 and T1 precursor, at 51,188 to 51,535
GFF2468
GFF2469 - NADP-dependent malic enzyme (EC 1.1.1.40), at 51,831 to 54,158
GFF2469
GFF2470 - hypothetical protein, at 54,385 to 54,546
GFF2470
GFF2471 - Bacterioferritin, at 54,752 to 55,228
GFF2471
Position (kb) 51
52
53
54
55 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 51.150 kb on - strand at 51.150 kb on - strand at 51.217 kb on - strand at 51.217 kb on - strand at 51.232 kb on - strand, within GFF2468 at 51.232 kb on - strand, within GFF2468 at 51.232 kb on - strand, within GFF2468 at 51.232 kb on - strand, within GFF2468 at 51.232 kb on - strand, within GFF2468 at 51.234 kb on + strand, within GFF2468 at 51.234 kb on + strand, within GFF2468 at 51.234 kb on + strand, within GFF2468 at 51.235 kb on - strand, within GFF2468 at 51.235 kb on - strand, within GFF2468 at 51.235 kb on - strand, within GFF2468 at 51.235 kb on - strand, within GFF2468 at 51.235 kb on - strand, within GFF2468 at 51.321 kb on + strand, within GFF2468 at 51.321 kb on + strand, within GFF2468 at 51.322 kb on - strand, within GFF2468 at 51.322 kb on - strand, within GFF2468 at 51.322 kb on - strand, within GFF2468 at 51.322 kb on - strand, within GFF2468 at 51.331 kb on - strand, within GFF2468 at 51.331 kb on - strand, within GFF2468 at 51.331 kb on - strand, within GFF2468 at 51.334 kb on - strand, within GFF2468 at 51.397 kb on - strand, within GFF2468 at 51.537 kb on - strand at 51.726 kb on - strand at 51.726 kb on - strand at 51.768 kb on + strand at 51.801 kb on - strand at 51.801 kb on - strand at 51.801 kb on - strand at 51.801 kb on - strand at 51.988 kb on + strand at 51.988 kb on + strand at 51.988 kb on + strand at 51.988 kb on + strand at 51.989 kb on - strand at 51.989 kb on - strand at 51.989 kb on - strand at 51.989 kb on - strand at 51.989 kb on - strand at 51.989 kb on - strand at 51.989 kb on - strand at 51.989 kb on - strand at 52.303 kb on + strand, within GFF2469 at 52.303 kb on + strand, within GFF2469 at 52.303 kb on + strand, within GFF2469 at 52.304 kb on - strand, within GFF2469 at 52.304 kb on - strand, within GFF2469 at 52.304 kb on - strand, within GFF2469 at 52.304 kb on - strand, within GFF2469 at 52.304 kb on - strand, within GFF2469 at 52.369 kb on + strand, within GFF2469 at 52.369 kb on + strand, within GFF2469 at 52.369 kb on + strand, within GFF2469 at 52.370 kb on - strand, within GFF2469 at 52.370 kb on - strand, within GFF2469 at 52.370 kb on - strand, within GFF2469 at 52.435 kb on + strand, within GFF2469 at 52.435 kb on + strand, within GFF2469 at 52.435 kb on + strand, within GFF2469 at 52.435 kb on + strand, within GFF2469 at 52.435 kb on + strand, within GFF2469 at 52.435 kb on + strand, within GFF2469 at 52.436 kb on - strand, within GFF2469 at 52.436 kb on - strand, within GFF2469 at 52.436 kb on - strand, within GFF2469 at 52.436 kb on - strand, within GFF2469 at 52.436 kb on - strand, within GFF2469 at 52.436 kb on - strand, within GFF2469 at 52.436 kb on - strand, within GFF2469 at 52.591 kb on + strand, within GFF2469 at 52.591 kb on + strand, within GFF2469 at 52.591 kb on + strand, within GFF2469 at 52.591 kb on + strand, within GFF2469 at 52.591 kb on + strand, within GFF2469 at 52.591 kb on + strand, within GFF2469 at 52.591 kb on + strand, within GFF2469 at 52.591 kb on + strand, within GFF2469 at 52.591 kb on + strand, within GFF2469 at 52.591 kb on + strand, within GFF2469 at 52.592 kb on - strand, within GFF2469 at 52.592 kb on - strand, within GFF2469 at 52.592 kb on - strand, within GFF2469 at 52.592 kb on - strand, within GFF2469 at 52.592 kb on - strand, within GFF2469 at 52.592 kb on - strand, within GFF2469 at 52.592 kb on - strand, within GFF2469 at 52.592 kb on - strand, within GFF2469 at 52.592 kb on - strand, within GFF2469 at 52.645 kb on + strand, within GFF2469 at 52.646 kb on - strand, within GFF2469 at 52.646 kb on - strand, within GFF2469 at 52.646 kb on - strand, within GFF2469 at 52.646 kb on - strand, within GFF2469 at 52.793 kb on - strand, within GFF2469 at 53.002 kb on + strand, within GFF2469 at 53.002 kb on + strand, within GFF2469 at 53.002 kb on + strand, within GFF2469 at 53.002 kb on + strand, within GFF2469 at 53.002 kb on - strand, within GFF2469 at 53.035 kb on + strand, within GFF2469 at 53.035 kb on + strand, within GFF2469 at 53.159 kb on - strand, within GFF2469 at 53.159 kb on - strand, within GFF2469 at 53.413 kb on + strand, within GFF2469 at 53.413 kb on + strand, within GFF2469 at 53.413 kb on + strand, within GFF2469 at 53.414 kb on - strand, within GFF2469 at 53.414 kb on - strand, within GFF2469 at 53.414 kb on - strand, within GFF2469 at 53.456 kb on - strand, within GFF2469 at 53.698 kb on + strand, within GFF2469 at 53.698 kb on + strand, within GFF2469 at 53.698 kb on + strand, within GFF2469 at 53.698 kb on + strand, within GFF2469 at 53.699 kb on - strand, within GFF2469 at 53.699 kb on - strand, within GFF2469 at 53.699 kb on - strand, within GFF2469 at 53.699 kb on - strand, within GFF2469 at 53.953 kb on + strand at 53.953 kb on + strand at 53.953 kb on + strand at 53.953 kb on + strand at 53.953 kb on + strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.954 kb on - strand at 53.959 kb on + strand at 53.959 kb on + strand at 53.960 kb on - strand at 53.960 kb on - strand at 53.960 kb on - strand at 54.021 kb on + strand at 54.022 kb on - strand at 54.097 kb on + strand at 54.098 kb on - strand at 54.182 kb on - strand at 54.211 kb on + strand at 54.213 kb on + strand at 54.213 kb on + strand at 54.213 kb on + strand at 54.214 kb on - strand at 54.214 kb on - strand at 54.236 kb on + strand at 54.236 kb on + strand at 54.236 kb on + strand at 54.253 kb on + strand at 54.253 kb on + strand at 54.253 kb on + strand at 54.254 kb on - strand at 54.316 kb on + strand at 54.317 kb on - strand at 54.317 kb on - strand at 54.317 kb on - strand at 54.317 kb on - strand at 54.665 kb on + strand at 54.676 kb on - strand at 54.783 kb on + strand at 54.783 kb on + strand at 54.783 kb on + strand at 54.784 kb on - strand at 54.784 kb on - strand at 54.784 kb on - strand at 54.784 kb on - strand at 54.888 kb on + strand, within GFF2471 at 54.888 kb on + strand, within GFF2471 at 54.888 kb on + strand, within GFF2471 at 54.888 kb on + strand, within GFF2471 at 54.888 kb on + strand, within GFF2471 at 54.888 kb on + strand, within GFF2471 at 54.889 kb on - strand, within GFF2471 at 55.095 kb on + strand, within GFF2471 at 55.096 kb on - strand, within GFF2471 at 55.096 kb on - strand, within GFF2471 at 55.096 kb on - strand, within GFF2471 at 55.096 kb on - strand, within GFF2471 at 55.143 kb on + strand, within GFF2471 at 55.144 kb on - strand, within GFF2471 at 55.155 kb on + strand, within GFF2471 at 55.155 kb on + strand, within GFF2471
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 51,150 - +2.9 51,150 - +2.8 51,217 - +2.0 51,217 - +1.8 51,232 - GFF2468 0.13 +0.4 51,232 - GFF2468 0.13 +0.5 51,232 - GFF2468 0.13 +0.3 51,232 - GFF2468 0.13 +0.0 51,232 - GFF2468 0.13 -0.0 51,234 + GFF2468 0.13 +4.5 51,234 + GFF2468 0.13 +4.1 51,234 + GFF2468 0.13 +3.4 51,235 - GFF2468 0.14 -0.3 51,235 - GFF2468 0.14 +0.1 51,235 - GFF2468 0.14 -0.0 51,235 - GFF2468 0.14 -1.3 51,235 - GFF2468 0.14 +0.3 51,321 + GFF2468 0.38 +3.5 51,321 + GFF2468 0.38 +4.3 51,322 - GFF2468 0.39 +1.3 51,322 - GFF2468 0.39 +0.9 51,322 - GFF2468 0.39 +0.7 51,322 - GFF2468 0.39 +1.2 51,331 - GFF2468 0.41 +1.3 51,331 - GFF2468 0.41 -0.5 51,331 - GFF2468 0.41 +2.6 51,334 - GFF2468 0.42 -0.3 51,397 - GFF2468 0.60 +1.1 51,537 - +1.4 51,726 - +1.6 51,726 - +2.6 51,768 + +0.6 51,801 - -0.5 51,801 - -0.4 51,801 - -0.4 51,801 - -0.1 51,988 + +2.6 51,988 + +2.2 51,988 + +0.0 51,988 + +2.8 51,989 - +2.5 51,989 - +2.0 51,989 - +0.8 51,989 - +1.9 51,989 - +2.6 51,989 - +2.5 51,989 - +2.7 51,989 - +2.5 52,303 + GFF2469 0.20 +2.8 52,303 + GFF2469 0.20 +3.0 52,303 + GFF2469 0.20 +1.3 52,304 - GFF2469 0.20 +2.7 52,304 - GFF2469 0.20 +2.3 52,304 - GFF2469 0.20 +2.5 52,304 - GFF2469 0.20 +2.7 52,304 - GFF2469 0.20 +2.0 52,369 + GFF2469 0.23 +2.3 52,369 + GFF2469 0.23 +2.5 52,369 + GFF2469 0.23 +2.3 52,370 - GFF2469 0.23 +2.3 52,370 - GFF2469 0.23 +2.8 52,370 - GFF2469 0.23 +1.8 52,435 + GFF2469 0.26 +1.5 52,435 + GFF2469 0.26 +2.0 52,435 + GFF2469 0.26 +1.9 52,435 + GFF2469 0.26 +2.1 52,435 + GFF2469 0.26 +2.0 52,435 + GFF2469 0.26 +2.1 52,436 - GFF2469 0.26 +1.3 52,436 - GFF2469 0.26 +2.5 52,436 - GFF2469 0.26 +2.5 52,436 - GFF2469 0.26 +2.0 52,436 - GFF2469 0.26 +1.5 52,436 - GFF2469 0.26 +1.7 52,436 - GFF2469 0.26 +2.1 52,591 + GFF2469 0.33 +2.2 52,591 + GFF2469 0.33 +2.6 52,591 + GFF2469 0.33 +2.3 52,591 + GFF2469 0.33 +2.5 52,591 + GFF2469 0.33 +4.0 52,591 + GFF2469 0.33 +3.1 52,591 + GFF2469 0.33 +2.4 52,591 + GFF2469 0.33 +1.5 52,591 + GFF2469 0.33 +2.3 52,591 + GFF2469 0.33 +2.3 52,592 - GFF2469 0.33 +2.0 52,592 - GFF2469 0.33 +1.4 52,592 - GFF2469 0.33 +2.3 52,592 - GFF2469 0.33 +1.7 52,592 - GFF2469 0.33 +2.6 52,592 - GFF2469 0.33 +3.2 52,592 - GFF2469 0.33 +2.8 52,592 - GFF2469 0.33 +2.5 52,592 - GFF2469 0.33 +3.4 52,645 + GFF2469 0.35 +2.3 52,646 - GFF2469 0.35 +2.4 52,646 - GFF2469 0.35 +2.4 52,646 - GFF2469 0.35 +2.2 52,646 - GFF2469 0.35 +1.9 52,793 - GFF2469 0.41 +0.3 53,002 + GFF2469 0.50 +3.0 53,002 + GFF2469 0.50 +2.1 53,002 + GFF2469 0.50 +3.4 53,002 + GFF2469 0.50 +3.2 53,002 - GFF2469 0.50 +2.6 53,035 + GFF2469 0.52 +2.8 53,035 + GFF2469 0.52 +2.0 53,159 - GFF2469 0.57 +2.8 53,159 - GFF2469 0.57 +3.3 53,413 + GFF2469 0.68 +2.7 53,413 + GFF2469 0.68 +1.6 53,413 + GFF2469 0.68 +1.3 53,414 - GFF2469 0.68 +2.9 53,414 - GFF2469 0.68 +2.4 53,414 - GFF2469 0.68 +3.0 53,456 - GFF2469 0.70 +2.3 53,698 + GFF2469 0.80 +2.6 53,698 + GFF2469 0.80 +1.5 53,698 + GFF2469 0.80 +2.8 53,698 + GFF2469 0.80 +1.7 53,699 - GFF2469 0.80 +2.5 53,699 - GFF2469 0.80 +1.9 53,699 - GFF2469 0.80 +0.4 53,699 - GFF2469 0.80 +2.5 53,953 + +2.3 53,953 + +3.0 53,953 + +2.3 53,953 + +2.8 53,953 + +3.0 53,954 - +2.5 53,954 - +2.2 53,954 - +3.1 53,954 - +2.5 53,954 - +2.4 53,954 - +2.2 53,954 - +3.2 53,954 - +1.6 53,954 - +2.5 53,959 + +3.1 53,959 + +1.2 53,960 - +2.9 53,960 - +3.3 53,960 - +2.5 54,021 + +2.7 54,022 - +2.7 54,097 + +2.2 54,098 - +2.5 54,182 - +0.6 54,211 + +2.0 54,213 + -0.7 54,213 + +1.0 54,213 + -0.7 54,214 - -0.5 54,214 - -0.8 54,236 + +0.4 54,236 + -0.4 54,236 + +0.2 54,253 + -0.4 54,253 + -0.4 54,253 + -0.1 54,254 - +0.0 54,316 + +0.0 54,317 - -0.1 54,317 - +0.2 54,317 - +2.0 54,317 - -0.2 54,665 + -0.1 54,676 - +1.0 54,783 + -0.1 54,783 + -0.5 54,783 + +0.1 54,784 - -1.0 54,784 - -0.8 54,784 - -0.7 54,784 - -0.1 54,888 + GFF2471 0.29 +1.0 54,888 + GFF2471 0.29 -0.1 54,888 + GFF2471 0.29 -1.0 54,888 + GFF2471 0.29 +0.2 54,888 + GFF2471 0.29 -0.6 54,888 + GFF2471 0.29 -0.2 54,889 - GFF2471 0.29 -0.3 55,095 + GFF2471 0.72 -0.4 55,096 - GFF2471 0.72 -0.3 55,096 - GFF2471 0.72 -0.5 55,096 - GFF2471 0.72 -0.6 55,096 - GFF2471 0.72 -0.5 55,143 + GFF2471 0.82 +0.0 55,144 - GFF2471 0.82 -0.6 55,155 + GFF2471 0.84 -1.0 55,155 + GFF2471 0.84 +0.5
Or see this region's nucleotide sequence