Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2445

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2443 and GFF2444 overlap by 4 nucleotidesGFF2444 and GFF2445 are separated by 23 nucleotidesGFF2445 and GFF2446 are separated by 93 nucleotidesGFF2446 and GFF2447 are separated by 403 nucleotides GFF2443 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45), at 24,800 to 25,336 GFF2443 GFF2444 - Probable transmembrane protein, at 25,333 to 26,004 GFF2444 GFF2445 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 26,028 to 26,840 GFF2445 GFF2446 - RNA-binding protein, at 26,934 to 27,341 GFF2446 GFF2447 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 27,745 to 28,914 GFF2447 Position (kb) 26 27Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 26.217 kb on + strand, within GFF2445at 26.217 kb on + strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.505 kb on + strand, within GFF2445at 26.505 kb on + strand, within GFF2445at 26.505 kb on + strand, within GFF2445at 26.506 kb on - strand, within GFF2445at 26.536 kb on - strand, within GFF2445at 26.536 kb on - strand, within GFF2445at 26.536 kb on - strand, within GFF2445at 26.536 kb on - strand, within GFF2445at 26.601 kb on + strand, within GFF2445at 26.601 kb on + strand, within GFF2445at 26.601 kb on + strand, within GFF2445at 26.602 kb on - strand, within GFF2445at 26.602 kb on - strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.709 kb on + strand, within GFF2445at 26.710 kb on - strand, within GFF2445at 26.938 kb on + strandat 26.989 kb on + strand, within GFF2446at 27.265 kb on + strand, within GFF2446at 27.266 kb on - strand, within GFF2446at 27.325 kb on + strandat 27.325 kb on + strandat 27.325 kb on + strandat 27.354 kb on + strandat 27.357 kb on + strandat 27.373 kb on - strandat 27.488 kb on + strandat 27.489 kb on - strandat 27.489 kb on - strandat 27.489 kb on - strandat 27.489 kb on - strandat 27.491 kb on + strandat 27.496 kb on - strandat 27.540 kb on - strandat 27.611 kb on + strandat 27.611 kb on + strandat 27.611 kb on + strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.613 kb on + strandat 27.613 kb on + strandat 27.613 kb on + strandat 27.613 kb on + strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.656 kb on - strandat 27.656 kb on - strandat 27.817 kb on + strandat 27.838 kb on + strandat 27.838 kb on + strandat 27.839 kb on - strandat 27.839 kb on - strandat 27.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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26,217 + GFF2445 0.23 +1.5
26,217 + GFF2445 0.23 -0.1
26,218 - GFF2445 0.23 +0.5
26,218 - GFF2445 0.23 -0.8
26,218 - GFF2445 0.23 +1.2
26,218 - GFF2445 0.23 +0.4
26,218 - GFF2445 0.23 +0.8
26,505 + GFF2445 0.59 +2.5
26,505 + GFF2445 0.59 +0.9
26,505 + GFF2445 0.59 +0.2
26,506 - GFF2445 0.59 +1.0
26,536 - GFF2445 0.62 +0.8
26,536 - GFF2445 0.62 +0.7
26,536 - GFF2445 0.62 +0.0
26,536 - GFF2445 0.62 +1.0
26,601 + GFF2445 0.70 +0.2
26,601 + GFF2445 0.70 +0.2
26,601 + GFF2445 0.70 +1.6
26,602 - GFF2445 0.71 +0.3
26,602 - GFF2445 0.71 +0.9
26,682 + GFF2445 0.80 -0.8
26,682 + GFF2445 0.80 -0.8
26,682 + GFF2445 0.80 +1.2
26,682 + GFF2445 0.80 +0.4
26,682 + GFF2445 0.80 +1.4
26,682 + GFF2445 0.80 +1.6
26,682 + GFF2445 0.80 +2.6
26,682 + GFF2445 0.80 +0.5
26,682 + GFF2445 0.80 +0.1
26,683 - GFF2445 0.81 +0.8
26,683 - GFF2445 0.81 -0.1
26,683 - GFF2445 0.81 +1.0
26,683 - GFF2445 0.81 +2.0
26,683 - GFF2445 0.81 -0.2
26,683 - GFF2445 0.81 +0.2
26,683 - GFF2445 0.81 +1.5
26,683 - GFF2445 0.81 +0.2
26,683 - GFF2445 0.81 +0.0
26,683 - GFF2445 0.81 +1.1
26,683 - GFF2445 0.81 +0.9
26,709 + GFF2445 0.84 +0.7
26,710 - GFF2445 0.84 +1.0
26,938 + -1.3
26,989 + GFF2446 0.13 +0.2
27,265 + GFF2446 0.81 -0.8
27,266 - GFF2446 0.81 -2.4
27,325 + -1.0
27,325 + +0.0
27,325 + -1.3
27,354 + -0.5
27,357 + -2.0
27,373 - +0.3
27,488 + +1.2
27,489 - +1.0
27,489 - +1.5
27,489 - +0.3
27,489 - +1.1
27,491 + +0.5
27,496 - +0.6
27,540 - +0.6
27,611 + +0.5
27,611 + +1.5
27,611 + +0.6
27,612 - +0.7
27,612 - +1.2
27,612 - +0.7
27,612 - +0.2
27,612 - +0.4
27,612 - -0.2
27,612 - +0.0
27,612 - -0.5
27,612 - -0.3
27,612 - +0.3
27,612 - +0.3
27,613 + +0.0
27,613 + -0.4
27,613 + +1.4
27,613 + +1.3
27,614 - -2.3
27,614 - -0.5
27,614 - -1.0
27,614 - -0.4
27,614 - -0.4
27,614 - -0.7
27,614 - -0.7
27,656 - -0.0
27,656 - -0.2
27,817 + -4.1
27,838 + -3.9
27,838 + -1.0
27,839 - -3.1
27,839 - -4.9
27,839 - -1.3

Or see this region's nucleotide sequence