Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2141

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,030,367	-		GFF2139	0.85	+0.1
1,030,402	+		GFF2139	0.89	-0.4
1,030,866	-		GFF2141	0.13	-2.0
1,031,330	+		GFF2141	0.63	-0.5
1,031,330	+		GFF2141	0.63	+0.5
1,031,603	+				-0.5
1,031,603	+				-0.4
1,031,603	+				-0.3
1,031,604	-				+0.0
1,031,604	-				+0.0
1,031,604	-				-0.3
1,031,604	-				-0.7
1,031,657	+				+0.3
1,031,658	-				+0.2
1,031,658	-				-0.4
1,031,724	-				-0.3
1,031,726	-				-2.3
1,031,758	+		GFF2142	0.24	+0.4
1,031,784	+		GFF2142	0.41	-0.9
1,031,784	+		GFF2142	0.41	-1.1
1,031,784	+		GFF2142	0.41	-0.8
1,031,784	+		GFF2142	0.41	-0.7
1,031,784	+		GFF2142	0.41	+0.2
1,031,784	+		GFF2142	0.41	-2.2
1,031,785	-		GFF2142	0.42	+0.4
1,032,385	+		GFF2143	0.44	-1.0