Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2129

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,017,147	+		GFF2127	0.40	-1.0
1,017,148	-		GFF2127	0.40	+0.1
1,017,402	+		GFF2127	0.81	-0.4
1,017,678	-				+0.2
1,018,312	+		GFF2129	0.15	+0.5
1,018,340	+		GFF2129	0.17	+1.3
1,018,340	+		GFF2129	0.17	-0.2
1,018,364	+		GFF2129	0.19	-1.0
1,018,589	+		GFF2129	0.36	+0.3
1,018,590	-		GFF2129	0.36	+0.6
1,018,590	-		GFF2129	0.36	+0.2
1,018,590	-		GFF2129	0.36	+1.6
1,018,590	-		GFF2129	0.36	+0.2
1,018,590	-		GFF2129	0.36	-0.1
1,019,039	+		GFF2129	0.69	-0.4
1,019,281	+		GFF2129	0.87	+0.1
1,019,281	+		GFF2129	0.87	+0.3
1,019,282	-		GFF2129	0.87	-0.2
1,019,330	+				-0.7
1,019,330	+				+1.1
1,019,330	+				+1.1
1,019,331	-				+0.5
1,019,331	-				-1.0
1,019,331	-				-0.8
1,019,482	+				-0.4
1,019,482	+				+0.7
1,019,482	+				-0.1
1,019,482	+				-0.9
1,019,482	+				+0.0
1,019,482	+				-0.9
1,019,483	-				+0.7
1,019,740	+		GFF2130	0.40	+0.2
1,019,741	-		GFF2130	0.40	-0.1
1,019,741	-		GFF2130	0.40	+0.8
1,020,068	-		GFF2130	0.86	+1.2