Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2029 and GFF2030 are separated by 11 nucleotides GFF2030 and GFF2031 are separated by 39 nucleotides
GFF2029 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 908,053 to 909,363
GFF2029
GFF2030 - Aldehyde dehydrogenase (EC 1.2.1.3), at 909,375 to 910,844
GFF2030
GFF2031 - hypothetical protein, at 910,884 to 911,018
GFF2031
Position (kb) 909
910
911 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 908.442 kb on - strand, within GFF2029 at 908.442 kb on - strand, within GFF2029 at 908.828 kb on + strand, within GFF2029 at 908.828 kb on + strand, within GFF2029 at 908.828 kb on + strand, within GFF2029 at 908.829 kb on - strand, within GFF2029 at 908.864 kb on + strand, within GFF2029 at 908.864 kb on + strand, within GFF2029 at 908.864 kb on + strand, within GFF2029 at 908.864 kb on + strand, within GFF2029 at 908.864 kb on + strand, within GFF2029 at 908.864 kb on + strand, within GFF2029 at 908.864 kb on + strand, within GFF2029 at 908.864 kb on + strand, within GFF2029 at 908.865 kb on - strand, within GFF2029 at 908.865 kb on - strand, within GFF2029 at 908.865 kb on - strand, within GFF2029 at 908.865 kb on - strand, within GFF2029 at 908.865 kb on - strand, within GFF2029 at 908.865 kb on - strand, within GFF2029 at 909.071 kb on + strand, within GFF2029 at 909.071 kb on + strand, within GFF2029 at 909.071 kb on + strand, within GFF2029 at 909.071 kb on + strand, within GFF2029 at 909.072 kb on - strand, within GFF2029 at 909.072 kb on - strand, within GFF2029 at 909.072 kb on - strand, within GFF2029 at 909.072 kb on - strand, within GFF2029 at 909.095 kb on + strand, within GFF2029 at 909.095 kb on + strand, within GFF2029 at 909.095 kb on + strand, within GFF2029 at 909.095 kb on + strand, within GFF2029 at 909.096 kb on - strand, within GFF2029 at 909.096 kb on - strand, within GFF2029 at 909.421 kb on + strand at 909.421 kb on + strand at 909.421 kb on + strand at 909.422 kb on - strand at 909.422 kb on - strand at 909.509 kb on - strand at 909.601 kb on + strand, within GFF2030 at 909.601 kb on + strand, within GFF2030 at 909.601 kb on + strand, within GFF2030 at 909.601 kb on + strand, within GFF2030 at 909.601 kb on + strand, within GFF2030 at 909.601 kb on + strand, within GFF2030 at 909.601 kb on + strand, within GFF2030 at 909.601 kb on + strand, within GFF2030 at 909.601 kb on + strand, within GFF2030 at 909.601 kb on + strand, within GFF2030 at 909.601 kb on + strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.602 kb on - strand, within GFF2030 at 909.603 kb on + strand, within GFF2030 at 909.736 kb on + strand, within GFF2030 at 909.736 kb on + strand, within GFF2030 at 909.736 kb on + strand, within GFF2030 at 909.736 kb on + strand, within GFF2030 at 909.736 kb on + strand, within GFF2030 at 909.736 kb on + strand, within GFF2030 at 909.737 kb on - strand, within GFF2030 at 909.737 kb on - strand, within GFF2030 at 909.737 kb on - strand, within GFF2030 at 909.737 kb on - strand, within GFF2030 at 909.737 kb on - strand, within GFF2030 at 909.814 kb on + strand, within GFF2030 at 909.814 kb on + strand, within GFF2030 at 909.815 kb on - strand, within GFF2030 at 909.815 kb on - strand, within GFF2030 at 909.815 kb on - strand, within GFF2030 at 909.815 kb on - strand, within GFF2030 at 909.815 kb on - strand, within GFF2030 at 909.815 kb on - strand, within GFF2030 at 909.895 kb on + strand, within GFF2030 at 909.896 kb on - strand, within GFF2030 at 909.896 kb on - strand, within GFF2030 at 910.174 kb on + strand, within GFF2030 at 910.375 kb on + strand, within GFF2030 at 910.375 kb on + strand, within GFF2030 at 910.375 kb on + strand, within GFF2030 at 910.375 kb on + strand, within GFF2030 at 910.375 kb on + strand, within GFF2030 at 910.375 kb on + strand, within GFF2030 at 910.375 kb on + strand, within GFF2030 at 910.375 kb on + strand, within GFF2030 at 910.376 kb on - strand, within GFF2030 at 910.376 kb on - strand, within GFF2030 at 910.376 kb on - strand, within GFF2030 at 910.376 kb on - strand, within GFF2030 at 910.465 kb on + strand, within GFF2030 at 910.465 kb on + strand, within GFF2030 at 910.465 kb on + strand, within GFF2030 at 910.465 kb on + strand, within GFF2030 at 910.465 kb on + strand, within GFF2030 at 910.465 kb on + strand, within GFF2030 at 910.465 kb on + strand, within GFF2030 at 910.465 kb on + strand, within GFF2030 at 910.466 kb on - strand, within GFF2030 at 910.466 kb on - strand, within GFF2030 at 910.466 kb on - strand, within GFF2030 at 910.466 kb on - strand, within GFF2030 at 910.466 kb on - strand, within GFF2030 at 910.466 kb on - strand, within GFF2030 at 910.466 kb on - strand, within GFF2030 at 910.466 kb on - strand, within GFF2030 at 910.466 kb on - strand, within GFF2030 at 910.489 kb on + strand, within GFF2030 at 910.489 kb on + strand, within GFF2030 at 910.538 kb on - strand, within GFF2030 at 910.538 kb on - strand, within GFF2030 at 910.538 kb on - strand, within GFF2030 at 910.888 kb on + strand at 910.888 kb on + strand at 910.888 kb on + strand at 910.888 kb on + strand at 910.889 kb on - strand at 910.889 kb on - strand at 910.889 kb on - strand at 910.889 kb on - strand at 910.889 kb on - strand at 910.889 kb on - strand at 910.889 kb on - strand at 910.889 kb on - strand at 910.976 kb on + strand, within GFF2031 at 910.976 kb on + strand, within GFF2031 at 910.976 kb on + strand, within GFF2031 at 910.976 kb on + strand, within GFF2031 at 910.976 kb on - strand, within GFF2031 at 910.977 kb on - strand, within GFF2031 at 910.977 kb on - strand, within GFF2031 at 910.978 kb on - strand, within GFF2031 at 911.004 kb on + strand, within GFF2031 at 911.005 kb on - strand at 911.005 kb on - strand at 911.005 kb on - strand at 911.102 kb on - strand at 911.135 kb on + strand at 911.135 kb on + strand at 911.135 kb on + strand at 911.135 kb on + strand at 911.135 kb on + strand at 911.135 kb on + strand at 911.135 kb on + strand at 911.135 kb on + strand at 911.135 kb on + strand at 911.135 kb on + strand at 911.135 kb on + strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.136 kb on - strand at 911.150 kb on + strand at 911.150 kb on + strand at 911.151 kb on - strand at 911.151 kb on - strand at 911.151 kb on - strand at 911.151 kb on - strand at 911.217 kb on + strand at 911.217 kb on + strand at 911.218 kb on - strand at 911.314 kb on + strand at 911.314 kb on + strand at 911.371 kb on + strand at 911.371 kb on + strand at 911.372 kb on - strand at 911.372 kb on - strand at 911.372 kb on - strand at 911.394 kb on + strand at 911.394 kb on + strand at 911.410 kb on + strand at 911.410 kb on + strand at 911.423 kb on + strand at 911.423 kb on + strand at 911.423 kb on + strand at 911.423 kb on + strand at 911.423 kb on + strand at 911.423 kb on + strand at 911.424 kb on - strand at 911.424 kb on - strand at 911.424 kb on - strand at 911.424 kb on - strand at 911.424 kb on - strand at 911.424 kb on - strand at 911.522 kb on + strand at 911.522 kb on + strand at 911.523 kb on - strand at 911.585 kb on - strand at 911.628 kb on + strand at 911.629 kb on - strand at 911.629 kb on - strand at 911.629 kb on - strand at 911.629 kb on - strand at 911.629 kb on - strand at 911.671 kb on + strand at 911.671 kb on + strand at 911.671 kb on + strand at 911.672 kb on - strand at 911.672 kb on - strand at 911.672 kb on - strand at 911.678 kb on - strand at 911.678 kb on - strand at 911.700 kb on + strand at 911.724 kb on + strand at 911.724 kb on + strand at 911.725 kb on - strand at 911.725 kb on - strand at 911.754 kb on + strand at 911.755 kb on - strand at 911.755 kb on - strand at 911.755 kb on - strand at 911.761 kb on - strand at 911.761 kb on - strand at 911.776 kb on + strand at 911.776 kb on + strand at 911.776 kb on + strand at 911.776 kb on + strand at 911.776 kb on + strand at 911.777 kb on - strand at 911.777 kb on - strand at 911.777 kb on - strand at 911.800 kb on + strand at 911.800 kb on + strand at 911.800 kb on + strand at 911.800 kb on + strand at 911.801 kb on - strand at 911.801 kb on - strand at 911.801 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 908,442 - GFF2029 0.30 +0.1 908,442 - GFF2029 0.30 -2.2 908,828 + GFF2029 0.59 -1.1 908,828 + GFF2029 0.59 -1.3 908,828 + GFF2029 0.59 -2.4 908,829 - GFF2029 0.59 +0.1 908,864 + GFF2029 0.62 -1.7 908,864 + GFF2029 0.62 +0.1 908,864 + GFF2029 0.62 +0.6 908,864 + GFF2029 0.62 -0.7 908,864 + GFF2029 0.62 -0.9 908,864 + GFF2029 0.62 -1.7 908,864 + GFF2029 0.62 -0.2 908,864 + GFF2029 0.62 -0.7 908,865 - GFF2029 0.62 -1.1 908,865 - GFF2029 0.62 -1.5 908,865 - GFF2029 0.62 -0.9 908,865 - GFF2029 0.62 -0.0 908,865 - GFF2029 0.62 -0.9 908,865 - GFF2029 0.62 -1.9 909,071 + GFF2029 0.78 -0.6 909,071 + GFF2029 0.78 -0.5 909,071 + GFF2029 0.78 +0.1 909,071 + GFF2029 0.78 -0.9 909,072 - GFF2029 0.78 +1.1 909,072 - GFF2029 0.78 -0.9 909,072 - GFF2029 0.78 -0.1 909,072 - GFF2029 0.78 -0.6 909,095 + GFF2029 0.79 -1.5 909,095 + GFF2029 0.79 -0.8 909,095 + GFF2029 0.79 +0.1 909,095 + GFF2029 0.79 -0.5 909,096 - GFF2029 0.80 -1.2 909,096 - GFF2029 0.80 -0.4 909,421 + +0.1 909,421 + -1.1 909,421 + -0.4 909,422 - -0.8 909,422 - -0.8 909,509 - -0.1 909,601 + GFF2030 0.15 -0.5 909,601 + GFF2030 0.15 -0.8 909,601 + GFF2030 0.15 -1.2 909,601 + GFF2030 0.15 +0.5 909,601 + GFF2030 0.15 -1.7 909,601 + GFF2030 0.15 -0.3 909,601 + GFF2030 0.15 +0.3 909,601 + GFF2030 0.15 -0.7 909,601 + GFF2030 0.15 -1.6 909,601 + GFF2030 0.15 -0.9 909,601 + GFF2030 0.15 -1.9 909,602 - GFF2030 0.15 -0.8 909,602 - GFF2030 0.15 +0.1 909,602 - GFF2030 0.15 -0.8 909,602 - GFF2030 0.15 -0.7 909,602 - GFF2030 0.15 -1.4 909,602 - GFF2030 0.15 -1.8 909,602 - GFF2030 0.15 -0.9 909,602 - GFF2030 0.15 +0.5 909,602 - GFF2030 0.15 -0.8 909,602 - GFF2030 0.15 -0.8 909,602 - GFF2030 0.15 -1.0 909,602 - GFF2030 0.15 -0.8 909,602 - GFF2030 0.15 -0.6 909,602 - GFF2030 0.15 +0.1 909,602 - GFF2030 0.15 -0.5 909,602 - GFF2030 0.15 -0.5 909,603 + GFF2030 0.16 -1.0 909,736 + GFF2030 0.25 -0.4 909,736 + GFF2030 0.25 -1.1 909,736 + GFF2030 0.25 -0.8 909,736 + GFF2030 0.25 -0.5 909,736 + GFF2030 0.25 +0.6 909,736 + GFF2030 0.25 -1.0 909,737 - GFF2030 0.25 -1.3 909,737 - GFF2030 0.25 -0.5 909,737 - GFF2030 0.25 -0.7 909,737 - GFF2030 0.25 +0.1 909,737 - GFF2030 0.25 -0.5 909,814 + GFF2030 0.30 -0.6 909,814 + GFF2030 0.30 -1.3 909,815 - GFF2030 0.30 -1.6 909,815 - GFF2030 0.30 -0.1 909,815 - GFF2030 0.30 -1.3 909,815 - GFF2030 0.30 -1.1 909,815 - GFF2030 0.30 -0.5 909,815 - GFF2030 0.30 -1.1 909,895 + GFF2030 0.35 -1.4 909,896 - GFF2030 0.35 -0.3 909,896 - GFF2030 0.35 -0.6 910,174 + GFF2030 0.54 -0.4 910,375 + GFF2030 0.68 -0.7 910,375 + GFF2030 0.68 -1.3 910,375 + GFF2030 0.68 -1.5 910,375 + GFF2030 0.68 -0.5 910,375 + GFF2030 0.68 +0.1 910,375 + GFF2030 0.68 -0.8 910,375 + GFF2030 0.68 -2.1 910,375 + GFF2030 0.68 -0.0 910,376 - GFF2030 0.68 -0.1 910,376 - GFF2030 0.68 -0.2 910,376 - GFF2030 0.68 -0.9 910,376 - GFF2030 0.68 -1.0 910,465 + GFF2030 0.74 -2.1 910,465 + GFF2030 0.74 +0.5 910,465 + GFF2030 0.74 -0.8 910,465 + GFF2030 0.74 -1.6 910,465 + GFF2030 0.74 -1.9 910,465 + GFF2030 0.74 -0.5 910,465 + GFF2030 0.74 +1.1 910,465 + GFF2030 0.74 -1.0 910,466 - GFF2030 0.74 -0.9 910,466 - GFF2030 0.74 -1.3 910,466 - GFF2030 0.74 +0.1 910,466 - GFF2030 0.74 -1.0 910,466 - GFF2030 0.74 +0.2 910,466 - GFF2030 0.74 -0.8 910,466 - GFF2030 0.74 -1.1 910,466 - GFF2030 0.74 -0.9 910,466 - GFF2030 0.74 -1.8 910,489 + GFF2030 0.76 +0.1 910,489 + GFF2030 0.76 -0.7 910,538 - GFF2030 0.79 -1.7 910,538 - GFF2030 0.79 -0.2 910,538 - GFF2030 0.79 -0.6 910,888 + -0.3 910,888 + -1.2 910,888 + -0.2 910,888 + -0.5 910,889 - -0.2 910,889 - +1.8 910,889 - -0.2 910,889 - +0.7 910,889 - +0.5 910,889 - +0.0 910,889 - +0.6 910,889 - -0.1 910,976 + GFF2031 0.68 +0.5 910,976 + GFF2031 0.68 +0.1 910,976 + GFF2031 0.68 +1.2 910,976 + GFF2031 0.68 +1.2 910,976 - GFF2031 0.68 -0.4 910,977 - GFF2031 0.69 -0.5 910,977 - GFF2031 0.69 +2.9 910,978 - GFF2031 0.70 +1.8 911,004 + GFF2031 0.89 +1.5 911,005 - +0.6 911,005 - +0.2 911,005 - +0.3 911,102 - -0.5 911,135 + -0.9 911,135 + -0.3 911,135 + +0.2 911,135 + +0.2 911,135 + -0.0 911,135 + -0.1 911,135 + +0.9 911,135 + +0.0 911,135 + +0.1 911,135 + -0.8 911,135 + -0.3 911,136 - -0.3 911,136 - -0.3 911,136 - -0.5 911,136 - +0.1 911,136 - -0.7 911,136 - +0.5 911,136 - +0.4 911,136 - +0.6 911,136 - -1.1 911,136 - -0.2 911,136 - +0.1 911,136 - +0.0 911,136 - -0.9 911,136 - -0.6 911,136 - -0.2 911,150 + -0.9 911,150 + -0.3 911,151 - +0.4 911,151 - -0.2 911,151 - +0.4 911,151 - -0.7 911,217 + -0.8 911,217 + -1.3 911,218 - +0.7 911,314 + +0.1 911,314 + -0.1 911,371 + +1.5 911,371 + -1.1 911,372 - -0.6 911,372 - +0.1 911,372 - -1.6 911,394 + +0.7 911,394 + -0.7 911,410 + -0.5 911,410 + -0.5 911,423 + +0.9 911,423 + -0.2 911,423 + +0.2 911,423 + +1.1 911,423 + -0.4 911,423 + -0.1 911,424 - -0.1 911,424 - +0.1 911,424 - -1.5 911,424 - +0.6 911,424 - -2.0 911,424 - -0.1 911,522 + +0.7 911,522 + -0.5 911,523 - +0.1 911,585 - +1.9 911,628 + -0.6 911,629 - -0.2 911,629 - -0.0 911,629 - +0.3 911,629 - -0.8 911,629 - -0.7 911,671 + +0.2 911,671 + -0.3 911,671 + -0.4 911,672 - -0.0 911,672 - -0.1 911,672 - +0.2 911,678 - +0.7 911,678 - -0.1 911,700 + -1.9 911,724 + -0.2 911,724 + +1.6 911,725 - -0.6 911,725 - -2.4 911,754 + -0.5 911,755 - +0.1 911,755 - -0.0 911,755 - -0.1 911,761 - +0.5 911,761 - +0.1 911,776 + +0.4 911,776 + -0.4 911,776 + -0.5 911,776 + +0.1 911,776 + -0.2 911,777 - -0.4 911,777 - +0.2 911,777 - -0.3 911,800 + -0.7 911,800 + -0.5 911,800 + -0.1 911,800 + -0.9 911,801 - -0.1 911,801 - -0.6 911,801 - -0.5
Or see this region's nucleotide sequence