Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1665 and GFF1666 are separated by 3 nucleotides GFF1666 and GFF1667 are separated by 74 nucleotides
GFF1665 - Holliday junction DNA helicase RuvB, at 521,300 to 522,352
GFF1665
GFF1666 - Holliday junction DNA helicase RuvA, at 522,356 to 522,934
GFF1666
GFF1667 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 523,009 to 523,947
GFF1667
Position (kb) 521
522
523 Strain fitness (log2 ratio) -2
-1
0
1 at 520.343 kb on + strand at 520.344 kb on - strand at 520.463 kb on + strand at 520.463 kb on + strand at 520.463 kb on + strand at 520.464 kb on - strand at 520.592 kb on + strand at 520.592 kb on + strand at 520.593 kb on - strand at 520.727 kb on + strand at 520.727 kb on + strand at 520.727 kb on + strand at 520.727 kb on + strand at 520.728 kb on - strand at 520.728 kb on - strand at 520.728 kb on - strand at 520.728 kb on - strand at 521.067 kb on - strand at 521.356 kb on - strand at 522.754 kb on - strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.829 kb on - strand, within GFF1666 at 522.829 kb on - strand, within GFF1666 at 522.829 kb on - strand, within GFF1666 at 522.914 kb on - strand at 522.929 kb on + strand at 522.930 kb on - strand at 523.156 kb on + strand, within GFF1667 at 523.156 kb on + strand, within GFF1667 at 523.157 kb on - strand, within GFF1667
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 520,343 + +0.2 520,344 - +0.3 520,463 + -1.1 520,463 + +0.5 520,463 + -0.2 520,464 - -0.2 520,592 + -0.7 520,592 + -0.2 520,593 - +0.3 520,727 + -1.0 520,727 + +1.5 520,727 + -0.5 520,727 + +1.1 520,728 - -0.5 520,728 - -0.8 520,728 - -0.3 520,728 - -0.3 521,067 - +0.4 521,356 - -1.9 522,754 - GFF1666 0.69 -1.7 522,828 + GFF1666 0.82 -0.3 522,828 + GFF1666 0.82 -1.7 522,828 + GFF1666 0.82 +0.1 522,828 + GFF1666 0.82 +0.1 522,828 + GFF1666 0.82 -1.3 522,829 - GFF1666 0.82 +0.1 522,829 - GFF1666 0.82 -1.5 522,829 - GFF1666 0.82 -1.3 522,914 - +0.1 522,929 + -0.3 522,930 - -1.8 523,156 + GFF1667 0.16 -0.0 523,156 + GFF1667 0.16 -1.0 523,157 - GFF1667 0.16 +0.0
Or see this region's nucleotide sequence